AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00990 ATGAGCTTGAAGGCTGGCATCGTCGGACTCCCTAACGTTGGCAAATCCACTCTCTTCAACGCCGTTGTTGAAAATGGGAAGGCTCAAGCTGCGAATTTCCCCTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATCCACGCCTCCATGTACTTTCTGATATCAGCAAATCTCAACGAGTAGTTCCAGCATCTATAGAATTTGTAGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAGGGTTTGGGTAATAAGTTCTTATCACATATTCGGGAAGTGGACTCCATACTTCAGGTTGTACGCTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAAGTTGATCCAAAGTCTGATATCGATGTCATCAACTTAGAGCTAGTTTTCTCAGATTTAGATCAGATAGAGAAAAGAATGGAGAAGCTGAAAAAAGGCAAAGCAAAGGATTCACAATCTAAACTGAAGGAGGAAGCGGAGAAATCAGCCCTGGAAAGAATTCGGGAAGCACTTATGGATGGAAAACCAGCACGATCAGTAACTTTAACCGATTTTGAGAAAGATGCTATAAAGCATCTTTGTTTGCTTACAATGAAACCAATCATATATGTGGCTAATGTTGCAGAATCTGACTTAGCTGAGCCTGGAAGTAATCCCTATGTTAAAGAAGTGATGAACCTTGCATCTGAGTTGCAATCTGGAATTGTAACAATCTCAGCACAGGTTGAGTCAGAACTTACTGAACTTCCATCTGAAGAAAGAACAGAATTTCTGAAATCCCTTGGTGTCAGTGAAAGTGGCCTTGGAAACCTTATTAGAGCAACATATAGCCTTTTGGGGCTGCGTACATACTTTACTTCTGGTGAAAAGGAAACAAAAGCATGGACCATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCAGACTTTGAGAAGGGTTTCATACGAGCTGAGACGGTGGCTTATGATGATTTTGTTGCTGCTGGTTCACTTGCAGCTGCTAGGGAAAAAGGACTTTTGAGATCCGAGGGAAAAGATTACATTGTACAAGAAGGAGATGTAATGCTGTTTCGTTTCAATGTTTGA 1113 41.87 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGKPARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGIVTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV* 371
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00990 370 CDD YchF 5 284 IPR041706 -
Vivi19g00990 370 Pfam Protein of unknown function (DUF933) 286 369 IPR013029 -
Vivi19g00990 370 NCBIfam redox-regulated ATPase YchF 1 370 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Vivi19g00990 370 PIRSF EngD 1 370 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Vivi19g00990 370 PANTHER OBG GTPASE FAMILY 1 369 - GO:0005737(PANTHER)|GO:0016887(PANTHER)
Vivi19g00990 370 Hamap Ribosome-binding ATPase YchF [ychF]. 2 370 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Vivi19g00990 370 Gene3D - 114 204 IPR023192 -
Vivi19g00990 370 Gene3D - 49 369 IPR012675 -
Vivi19g00990 370 CDD TGS-YchF-OLA1 284 368 IPR013029 -
Vivi19g00990 370 PRINTS GTP1-OBG GTP-binding protein family signature 71 86 IPR006073 GO:0005525(InterPro)
Vivi19g00990 370 PRINTS GTP1-OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525(InterPro)
Vivi19g00990 370 PRINTS GTP1-OBG GTP-binding protein family signature 27 45 IPR006073 GO:0005525(InterPro)
Vivi19g00990 370 PRINTS GTP1-OBG GTP-binding protein family signature 5 25 IPR006073 GO:0005525(InterPro)
Vivi19g00990 370 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 3 263 IPR031167 GO:0005525(InterPro)
Vivi19g00990 370 FunFam Ribosome-binding ATPase YchF 273 369 - -
Vivi19g00990 370 Gene3D - 3 285 IPR027417 -
Vivi19g00990 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 308 IPR027417 -
Vivi19g00990 370 SUPERFAMILY TGS-like 286 367 IPR012676 -
Vivi19g00990 370 FunFam Ribosome-binding ATPase YchF 114 204 - -
Vivi19g00990 370 Pfam 50S ribosome-binding GTPase 5 108 IPR006073 GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00990 K19788 obg-like ATPase 1
Vivi19g00990 K06942 ribosome-binding ATPase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:8946177 Vivi19g00990 Vivi-Chr19:19485257 dispersed