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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01005 ATGCTTAGACATGGTTACTTCCATGATAAAATTCTATTGCACTCGCCATTTATGAGTATAACTTTTTCTGTACTAATTTCTTCGTGCAGGTTGGTTCAAACAATGGATTACTCTGTAATACTATTTGATACAGCTCCTACTGGTCATACACTTTGGTTATTGCAATTTCCATCATTAGAGAAGGGGCTTGCTAAAATGATGTCCTTAAAAAATAAATTTGGTGGTTTATTAAATCAGATGACCTGTCTCTTATTTGGTGTGGACGAGGTATTTGGTGAGGATGCACTTCTGGGAAGGCTCGAGGGCATGAAAGATGTGATTGAACAAGTGACTAAGCGATTCAAGGACCCAGTAAGATCTCTCATCCTAAAATATTTTCTATGGCTGGACACTAAATCACTTCTGTAG 408 37.5 MLRHGYFHDKILLHSPFMSITFSVLISSCRLVQTMDYSVILFDTAPTGHTLWLLQFPSLEKGLAKMMSLKNKFGGLLNQMTCLLFGVDEVFGEDALLGRLEGMKDVIEQVTKRFKDPVRSLILKYFLWLDTKSLL* 136
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01005 135 Pfam Anion-transporting ATPase 29 120 IPR025723 -
Vivi19g01005 135 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vivi19g01005 135 Gene3D - 8 123 IPR027417 -
Vivi19g01005 135 PANTHER ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE 29 118 IPR016300 GO:0005524(InterPro)|GO:0006620(PANTHER)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0043529(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01005 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:15225095 Vivi19g01005 Vivi-Chr19:19846206 dispersed
Vivi Vivi-Chr19:19846206 Vivi6g00234 Vivi-Chr6:2996460 dispersed
Vivi Vivi-Chr19:19846206 Vivi13g00537 Vivi-Chr13:6016724 transposed