AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01006 ATGCAAGCATCCACTAGTCTCTTTTCCTGCCCCCTACCTTACAAATCCTTAGCCGCTCCCCAGCTTCCTGGAGAATGTATGCCCTTTGTAAGACCCATAAAGCTTTCTTGGTCATCTTCGCTTCAGAGACCTGTGAAGTTCAGTTCAGTTACAGGCTTGTCCAGGGACTTGTCAATGTTTTCTTCGATGGCTTTCAATCCGAATGTAAGTGAAGATACTGATGATATGTATGACGAATTATTTGAAAAATATGGAAAGGTGGTGTTGAGAAGAGGTGACAAGAAGCCTCATAGTGCAGAGGTTGATGATGATGCCGAAAGCCTAGCATTTGCGGTGGCATTGGCCAAGGTTGCCAGTGATGTCAAGGCTGCCGATATAAGGGTCCTCTTTGTGAAGCCTTTAGTGTATTGGACTCGTTTTTTTATCATTGCCACAGCATTTTCTCGCCCCCAAATTGATGCCATTGGGTCCAGGATAAGAGATCTCGCTGAAAAGCAGTATGGAAAAGTTCCATCCGGAGATTCAAAACCTAACTCTTGGACTTTGTTGGACTTTGGTGATGTAGTCATCCATATATTCCTTCCTCAACAGCGAGCATTCTACAACCTGGAAGAGTTCTATGCTAATGCAACACTCATTGAGCTGCCTTTCGAAAACTAG 660 44.24 MQASTSLFSCPLPYKSLAAPQLPGECMPFVRPIKLSWSSSLQRPVKFSSVTGLSRDLSMFSSMAFNPNVSEDTDDMYDELFEKYGKVVLRRGDKKPHSAEVDDDAESLAFAVALAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKQYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYANATLIELPFEN* 220
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01006 219 PANTHER IOJAP SUPERFAMILY ORTHOLOG 68 219 IPR004394 GO:0017148(PANTHER)|GO:0043023(PANTHER)|GO:0090071(PANTHER)
Vivi19g01006 219 SUPERFAMILY Nucleotidyltransferase 108 216 IPR043519 -
Vivi19g01006 219 Pfam Ribosomal silencing factor during starvation 114 207 - -
Vivi19g01006 219 Gene3D Beta Polymerase, domain 2 107 215 IPR043519 -
Vivi19g01006 219 NCBIfam ribosome silencing factor 114 207 IPR004394 -
Vivi19g01006 219 Hamap Ribosomal silencing factor RsfS [rsfS]. 105 208 IPR004394 -
Vivi19g01006 219 FunFam Protein Iojap, chloroplastic 106 211 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01006 - -