AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01014 ATGTATCCCATAGGAGCTTTTTTTTCACCATCAACCAAACGAAGCACACGAACTAGGGGACCCGAAACCTTTAAGCAAAACACAATAGTGTTCCAAAATGAAGGCATTAGAACTATGTTGGCTATAGTTTTCCCCTTCTGCTCTTTTGCCCATTTACTATCTGACCAATCCGAGCTTGTAAACATCTTCCTCAAATTGTTTTTTTGTTCATGCAATCGCGATAATGTGATGAAAGCAGTTGCAAACCGAGTCTTAGCAGGCCTAAGCAATTCCCTTTGTCCAGTAAACCGCCTCATCATGTTGAGTGGAGTGACGTCTGCCTACAGATACTTGTTAAGTTTAAAGATCACATCCCAAATGGCACCCATCAGGGGCATTCTTACTCTGCAAAGAATGGCATTAGTTTCACGTCAAAGCAAAAAGTGGGGCCCAGGCTGTAGAGCTTTTAGCACTCAGGCTGCAACAACTGCAAGTGCTTCACAGCCTCCACCACCTCCTCCACCTCCAGAGAAAACCCATTTTGGTGGCCTGAAAGATGAGGACCGCATCTTCACCAATCTTTATGGGTTGCATGACCCATTTCTTAAAGGTGCCATGAAAAGGGGCGACTGGTACAGGACCAAAGACATAGTACTCAAGGGTTCTGATTGGATTGTAAATGAAATGAAGAAATCTGGTCTCCGTGGACGTGGTGGTGCCGGTTTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAAGTATCTGATGGCCGTCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACATTAATACCTGGGGGTTCATCCGTTCCTCTCCTTCCCAAGCACATATGCTGTCTTACTTTTACAAGCATGAGAGCTGTGGACAGTGGCACACAATCTGTGCATTGGGTGATGCAGCTGCTTGGCCTGTTCAGGGTCTTATCAGGCATTTTAGACCAGAACTTGAGAGAAGGATCAGGGAGCGTGCGGAGAGGGAGTTGCTGGAAGTGGCCGCTGCTTAAGTATTTTATGCAGGGAAACACCGGAACTGGTGGGTAA 1053 46.25 MYPIGAFFSPSTKRSTRTRGPETFKQNTIVFQNEGIRTMLAIVFPFCSFAHLLSDQSELVNIFLKLFFCSCNRDNVMKAVANRVLAGLSNSLCPVNRLIMLSGVTSAYRYLLSLKITSQMAPIRGILTLQRMALVSRQSKKWGPGCRAFSTQAATTASASQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTLIPGGSSVPLLPKHICCLTFTSMRAVDSGTQSVHWVMQLLGLFRVLSGILDQNLREGSGSVRRGSCWKWPLLKYFMQGNTGTGG* 351
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01014 350 MobiDBLite consensus disorder prediction 1 20 - -
Vivi19g01014 350 Pfam Respiratory-chain NADH dehydrogenase 51 Kd subunit 222 266 IPR011538 -
Vivi19g01014 350 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 152 267 IPR050837 GO:0005747(PANTHER)|GO:0006120(PANTHER)
Vivi19g01014 350 MobiDBLite consensus disorder prediction 153 176 - -
Vivi19g01014 350 SUPERFAMILY Nqo1 FMN-binding domain-like 180 267 IPR037225 -
Vivi19g01014 350 Gene3D - 227 268 IPR037225 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01014 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr12:12473609 Vivi19g01014 Vivi-Chr19:20026272 dispersed