AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01015 ATGGCTCTCAGCTATAAATATTGGGATGATTGTGTGGATCCACGAGATCTGGAGGCACTGTGGTTGGATCCCGATGTGAGCACTGAATGGCTTGACGTTGGAGAGACTAGAGGTAGGAAAGTTCACCTCTCAAGGGATCCTGATGGAGAGCCTTATCTCACTCAAATTGAGATGAAGGCAGTTGCTGCGATTGTTGTCAGCAGGCATTTTGATTCACAGATAGATCTGGAGATGATATGTGCTATCTCTGAAATTGAAAGTGATAGACAGCCACTTGCTGAACAGTATGACAAAAAGGCTAAAGACACTACTCTGGGGATCATGCAACTTCTACCAAAAACTGCTGATTGGCTGGTTAGGGAGTTGGGCTACCGGACATATGAAGTGGAAGGGAATCCAATCCTTCTGTTCAGGCCTTTTATAAATGTATACCTAGGTGCTGCCTACCTTAAGTGGTTATCAAACTATGATGGAAAAGAAAGAAGTGAAGAGTTTGTAGTTCGGGCATACAAAGGTGGCCCAAAGAAGGCAGCTCATAAGTCAACTTTGGAATATTGGAAGCGCTATCTTTCAGTTAAAGAAAGTCTTCCATTTAGAAAATCTTTGTACGATGGCCCATATCCAAATGATGCTTCTGGTTCTGGTGCACCTGTTTCAGTAATTAAAGGTGTTAATCATACATTTTGGGACTCTAGAGCTTCTCCTGAAGACATGGACGAGATGTGGAATCACCCTGATGTCCTGAAAGAGTGGAGCAAGTGCGGAGAGATACGGGGAAAGGTGCTATTTTCACATGATAAAGAGAAGAGACCTTATCTTTCTCGTGTGGAAGTGAAGGCAGTTGCAGAAATCATTCTTTCAAAACACTTCAGCACAAGACAAGTTAAATCTACAATTCTATGTGCTCTTGCAGAGATTGTTAGCATGCGCTTTGTGAATGGCGTCGGTGCACGAACTGGAATAATGGGAATAGATTACCCAACAGCTATGTGGCTTTACAGAGATTTGGGCTACAAGGCTTACAGAGTTGAAGCTGTGGATGATCTAACCAAGCCATTCATCTCCATGTACTTTGGTGCAGCTTATTTAGCTTGGTTATCTGAATATGAAGGGCGGCAAAGAACTCCTCAATTTATTGTTCAGGCTTATCTAGCTGGACCAAAGAATGTGAATCTTCAGGAAACGGGTCATCATTGGCTTAACTTTGAGAAAGCAGTAACCTATTATGAACCAAAAAAGAAGGAAGATGGAGGTTGCTCGATATTATAA 1269 42.4 MALSYKYWDDCVDPRDLEALWLDPDVSTEWLDVGETRGRKVHLSRDPDGEPYLTQIEMKAVAAIVVSRHFDSQIDLEMICAISEIESDRQPLAEQYDKKAKDTTLGIMQLLPKTADWLVRELGYRTYEVEGNPILLFRPFINVYLGAAYLKWLSNYDGKERSEEFVVRAYKGGPKKAAHKSTLEYWKRYLSVKESLPFRKSLYDGPYPNDASGSGAPVSVIKGVNHTFWDSRASPEDMDEMWNHPDVLKEWSKCGEIRGKVLFSHDKEKRPYLSRVEVKAVAEIILSKHFSTRQVKSTILCALAEIVSMRFVNGVGARTGIMGIDYPTAMWLYRDLGYKAYRVEAVDDLTKPFISMYFGAAYLAWLSEYEGRQRTPQFIVQAYLAGPKNVNLQETGHHWLNFEKAVTYYEPKKKEDGGCSIL* 423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01015 422 Gene3D - 50 205 - -
Vivi19g01015 422 Gene3D - 292 415 - -
Vivi19g01015 422 PANTHER TRANSGLYCOSYLASE 1 422 - -
Vivi19g01015 422 SUPERFAMILY Lysozyme-like 73 196 IPR023346 -
Vivi19g01015 422 CDD LT-like 312 391 - -
Vivi19g01015 422 Pfam Transglycosylase SLT domain 312 399 IPR008258 -
Vivi19g01015 422 Pfam Transglycosylase SLT domain 72 186 IPR008258 -
Vivi19g01015 422 SUPERFAMILY Lysozyme-like 312 392 IPR023346 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01015 - -