AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01018 ATGGAAAGCCTCCAGCCACACCCATGCCTGGAGAAGCTCTATGTAAAAGGCTATGGAGGTGGGAGGTTTCCAAGTTGGATGATGGATGAGTTGCATTTGCGGCTCCCTAACCTACTTCATATTCATTTAGAAGGATGTAAAATAAGCCAAATTCTGCCATCCTTTGCTCAACTCCCTTTTCTCCAGTCTCTGGATCTTAATGGTCTTGATGAGGTGGAATACATGATGGAGTGTTCATCAAAACTGCCATTCTTCCCATCTCTTCAAAGACTCCAGCTCAGTTATTTGTGTAAATTGAATAGATTGTGGAGGACGGACTTACCAGCAGAGCAACTTCCTTTGTTTCCTTGTCTTTCTCAATTAGTTATTGAATATTGTGATAATTTGACATCATTGACACTCCCTTCATCTCCTTGTCTTTCTAAAATAGAGATCACGTGTTGTGATAACTTAACATCCTTGCCACTGCCTCCATTGCCTTGTCTTTCTAAATTACATATCGATCAAATCCCTAAGTTGGCATCCTTGGAACTGCATTCATCTCCTCATCTTTGCTATTTGTGTATCAAAAGTTGCCCTTGA 582 40.89 MESLQPHPCLEKLYVKGYGGGRFPSWMMDELHLRLPNLLHIHLEGCKISQILPSFAQLPFLQSLDLNGLDEVEYMMECSSKLPFFPSLQRLQLSYLCKLNRLWRTDLPAEQLPLFPCLSQLVIEYCDNLTSLTLPSSPCLSKIEITCCDNLTSLPLPPLPCLSKLHIDQIPKLASLELHSSPHLCYLCIKSCP* 194
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01018 193 Gene3D Ribonuclease Inhibitor 1 157 IPR032675 -
Vivi19g01018 193 SUPERFAMILY L domain-like 4 192 - -
Vivi19g01018 193 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 2 177 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01018 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:20163017 Vivi19g01004 Vivi-Chr19:19813960 dispersed
Vivi Vivi-Chr13:18556349 Vivi19g01018 Vivi-Chr19:20163017 wgd