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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01020 ATGGATGCTACCATGGATGATGAACAAGTTGTGCTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTCGTTTCATTTTATCTTCGGAGAAAGATAGAGAAAAAGCCCATTAGTTTTGAACTCATCAAACAGATGGATATTTACAAATACGATCCCTGGGATCTTCCAAGTAAGTTTTTCTATGTTACAGACAAGGAGTGGTATTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATACGACCCAATAGAGTTACGGGGTCCGGATTTTGGAAAGCAACAGGCATAGACAAGCCGATATATTCTGTTCAAGGACGAGGACATGACTGCGTTGGACTCAAGAAATCATTAGTATACTACCGTGGAAGTGCAGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTGCAGACCAGAAAAATACTACTCACAATGCCACGACTGCTGATGACGAAGTTGAAATATGGACGCTTTGTCGGATTTTTAAGCAAAATGTGTCATACAGAAAGTCGACACCAGATTGGAGAGAAACATCTGCAAAACGCAAGCCAACAAAGTCAAGGCCTAAAACAGGCAATATGGATTCAGAAAATTGGGAAGGTTACATAAGTTTTGGAGCTCCAGAGGCTCTTGATAACGAGAAGAAGCTTTTTGTTGGTCACAATATGAATGAAAGAAACCAGTTCCATGTGGTTTCAGATCCAGAGTCATGCTTTAGTGTTTTGAGTGAGGAAGCTAGGGAGTTCTTTACAAATAGGAATTGGGATGAGATCTTATCAGCCATGGACTATGATTTTGATCCATATCATTTTTAA 834 40.53 MDATMDDEQVVLPGFRFHPTDEELVSFYLRRKIEKKPISFELIKQMDIYKYDPWDLPSKFFYVTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVQGRGHDCVGLKKSLVYYRGSAGKGTKTDWMMHEFRLPADQKNTTHNATTADDEVEIWTLCRIFKQNVSYRKSTPDWRETSAKRKPTKSRPKTGNMDSENWEGYISFGAPEALDNEKKLFVGHNMNERNQFHVVSDPESCFSVLSEEAREFFTNRNWDEILSAMDYDFDPYHF* 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01020 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 227 - -
Vivi19g01020 277 SUPERFAMILY NAC domain 7 170 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Vivi19g01020 277 Pfam No apical meristem (NAM) protein 13 141 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Vivi19g01020 277 ProSiteProfiles NAC domain profile. 11 170 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Vivi19g01020 277 MobiDBLite consensus disorder prediction 179 201 - -
Vivi19g01020 277 Gene3D NAC domain 20 175 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Vivi19g01020 277 FunFam NAC domain-containing protein 35 20 173 - -
Vivi19g01020 277 MobiDBLite consensus disorder prediction 180 196 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01020 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:20226011 Vivi19g01024 Vivi-Chr19:20288420 dispersed
Vivi Vivi-Chr19:20170738 Vivi19g01020 Vivi-Chr19:20226011 tandem
Vivi Vivi-Chr19:20226011 Vivi19g01021 Vivi-Chr19:20230675 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g01334 . 4 527 NAC Transcription Factor family AT3G56570 54.682 0.0 522.0
Vivi1g01318 . 1 251 NAC Transcription Factor family AT5G13180 61.977 9.91e-104 299.0
Vivi2g00491 . 1 395 NAC Transcription Factor family AT1G12260 57.215 7.52e-150 425.0
Vivi1g00961 . 6 197 NAC Transcription Factor family AT3G56570 28.218 3.05e-08 54.3
Vivi7g00843 . 93 331 NAC Transcription Factor family AT4G37130 69.295 1.20e-114 338.0
Vivi17g00571 . 14 248 NAC Transcription Factor family AT5G61430 71.967 6.56e-121 347.0
Vivi17g00321 . 1 313 NAC Transcription Factor family AT3G18400 60.241 1.59e-124 358.0
Vivi17g00058 . 1 167 NAC Transcription Factor family AT5G13180 61.714 1.35e-78 234.0
Vivi18g00242 . 1 289 NAC Transcription Factor family AT1G01720 66.107 4.63e-138 388.0
Vivi18g00894 . 28 169 NAC Transcription Factor family AT3G17730 28.169 1.32e-13 68.2
Vivi14g01548 . 9 233 NAC Transcription Factor family AT5G39820 68.0 4.05e-107 315.0
Vivi14g01570 . 1 336 NAC Transcription Factor family AT5G61430 55.752 4.02e-117 338.0
Vivi1g00260 . 48 238 NAC Transcription Factor family AT1G28470 58.639 1.06e-73 232.0
Vivi2g00650 . 1 242 NAC Transcription Factor family AT4G17980 58.123 1.11e-100 296.0
Vivi18g00054 . 2 177 NAC Transcription Factor family AT1G76420 79.545 7.88e-106 310.0
Vivi19g00180 . 5 375 NAC Transcription Factor family AT5G53950 50.785 4.14e-114 334.0
Vivi19g00271 . 1 316 NAC Transcription Factor family AT1G52890 58.187 1.50e-125 360.0
Vivi19g00272 . 1 363 NAC Transcription Factor family AT3G15510 57.258 4.93e-127 366.0
Vivi11g00245 . 4 351 NAC Transcription Factor family AT5G56620 56.11 1.89e-127 373.0
Vivi13g00583 . 1 567 NAC Transcription Factor family AT5G04410 47.315 1.74e-164 478.0
Vivi13g00582 . 21 199 NAC Transcription Factor family AT3G10480 68.715 1.44e-86 268.0
Vivi9g00674 . 247 299 NAC Transcription Factor family AT3G57150 64.151 1.26e-17 73.6
Vivi16g00430 . 1 395 NAC Transcription Factor family AT1G12260 54.815 8.78e-143 408.0
Vivi4g01089 . 4 247 NAC Transcription Factor family AT2G18060 80.408 1.30e-150 423.0
Vivi2g00252 . 2 361 NAC Transcription Factor family AT2G46770 56.649 1.44e-128 371.0
Vivi2g00279 . 19 563 NAC Transcription Factor family AT1G33060 42.615 6.56e-127 387.0
Vivi1g00935 . 1 228 NAC Transcription Factor family AT1G69490 67.544 7.69e-113 324.0
Vivi1g00907 . 13 331 NAC Transcription Factor family AT1G26870 56.173 5.81e-114 337.0
Vivi19g01024 . 12 191 NAC Transcription Factor family AT2G43000 63.452 2.01e-82 248.0
Vivi19g01022 . 19 165 NAC Transcription Factor family AT2G43000 69.481 3.74e-73 221.0
Vivi19g01021 . 13 201 NAC Transcription Factor family AT2G43000 63.547 3.10e-86 257.0
Vivi19g01020 . 13 275 NAC Transcription Factor family AT2G43000 49.466 6.16e-82 246.0
Vivi19g01019 . 12 275 NAC Transcription Factor family AT2G43000 48.746 3.98e-84 252.0
Vivi19g00968 . 1 256 NAC Transcription Factor family AT1G56010 51.894 6.17e-78 236.0
Vivi12g00247 . 1 236 NAC Transcription Factor family AT4G28500 73.418 8.23e-127 362.0
Vivi12g00069 . 7 275 NAC Transcription Factor family AT2G43000 54.452 2.11e-98 288.0
Vivi10g00147 . 1 236 NAC Transcription Factor family AT4G28500 71.784 2.83e-124 356.0
Vivi7g01257 . 5 289 NAC Transcription Factor family AT1G01720 63.448 3.91e-120 343.0
Vivi12g01246 . 50 211 NAC Transcription Factor family AT2G02450 91.358 1.60e-110 319.0
Vivi3g00251 . 1 274 NAC Transcription Factor family AT2G17040 59.507 1.34e-117 337.0
Vivi6g00288 . 15 186 NAC Transcription Factor family AT1G61110 67.63 1.51e-80 248.0
Vivi6g00223 . 8 185 NAC Transcription Factor family AT3G04070 49.162 1.76e-49 168.0
Vivi6g00003 . 6 201 NAC Transcription Factor family AT1G77450 64.824 3.00e-87 259.0
Vivi8g00589 . 15 186 NAC Transcription Factor family AT1G61110 67.63 2.71e-84 256.0
Vivi18g01564 . 3 234 NAC Transcription Factor family AT5G22380 56.223 1.97e-90 264.0
Vivi4g01317 . 12 181 NAC Transcription Factor family AT1G61110 43.529 7.22e-44 147.0
Vivi4g01295 . 1 274 NAC Transcription Factor family AT5G64060 50.365 1.48e-86 270.0
Vivi15g00622 . 6 344 NAC Transcription Factor family AT2G46770 58.011 4.58e-128 369.0
Vivi15g00593 . 73 151 NAC Transcription Factor family AT3G10480 48.193 6.21e-19 79.3
Vivi15g00592 . 1 194 NAC Transcription Factor family AT4G35580 52.525 9.73e-63 201.0
Vivi15g00591 . 6 162 NAC Transcription Factor family AT4G35580 60.377 9.42e-63 201.0
Vivi15g00590 . 1 292 NAC Transcription Factor family AT4G35580 35.974 8.82e-51 178.0
Vivi15g00589 . 1 162 NAC Transcription Factor family AT4G35580 60.366 2.09e-59 210.0
Vivi15g00587 . 4 190 NAC Transcription Factor family AT4G35580 57.214 1.67e-75 239.0
Vivi7g00575 . 1 177 NAC Transcription Factor family AT4G28530 72.881 5.92e-92 274.0
Vivi17g00986 . 1 245 NAC Transcription Factor family AT3G17730 76.829 4.56e-133 373.0
Vivi12g00812 . 9 179 NAC Transcription Factor family AT1G61110 43.275 2.65e-47 155.0
Vivi14g01281 . 82 239 NAC Transcription Factor family AT3G57150 32.99 7.85e-21 94.0
Vivi14g01286 . 20 224 NAC Transcription Factor family AT5G56620 55.502 6.18e-68 218.0
Vivi13g00208 . 9 217 NAC Transcription Factor family AT3G56570 22.535 3.39e-06 47.8
Vivi14g01127 . 11 162 NAC Transcription Factor family AT5G13180 53.797 2.25e-54 170.0
Vivi8g01370 . 5 256 NAC Transcription Factor family AT3G04070 58.268 1.29e-88 279.0
Vivi8g01368 . 19 216 NAC Transcription Factor family AT5G18270 77.273 5.33e-111 327.0
Vivi8g00954 . 35 234 NAC Transcription Factor family AT5G22380 52.074 1.17e-67 206.0
Vivi8g00717 . 1 411 NAC Transcription Factor family AT3G57150 70.213 0.0 585.0
Vivi18g01409 . 5 323 NAC Transcription Factor family AT1G71930 55.09 1.36e-113 330.0
Vivi4g00706 . 1 628 NAC Transcription Factor family AT1G65910 45.814 8.77e-171 499.0
Vivi4g00228 . 8 316 NAC Transcription Factor family AT2G24430 54.203 1.73e-115 335.0
Vivi4g00574 . 16 61 NAC Transcription Factor family AT1G61110 58.696 2.95e-13 64.3
Vivi6g01270 . 3 237 NAC Transcription Factor family AT2G27300 53.846 4.10e-95 285.0
Vivi6g01254 . 3 232 NAC Transcription Factor family AT5G22380 57.692 7.04e-93 270.0
Vivi19g01197 . 9 371 NAC Transcription Factor family AT1G79580 53.151 1.79e-116 337.0
Vivi19g01176 . 1 235 NAC Transcription Factor family AT1G54330 61.069 4.65e-96 283.0
Vivi18g01775 . 3 341 NAC Transcription Factor family AT4G10350 60.955 5.23e-141 400.0
Vivi16g00946 . 1 447 NAC Transcription Factor family AT4G35580 39.723 2.73e-93 293.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi NAM 2.5e-35 No_clan TF NAC