AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01031 ATGAGAAAGGTGGTGAGTGAAGTGGGTATTGGATCTTCTGTACTGATCAAACCACTTATATGTGTATGCATATATATATTTACAGTTTCAGGTCTTAGCAGTATGATCCTCGTAAATAAGAGAAGAGCGATGGAACTCTTCCCAGAAAGTGTGACAAAACTTTGGAATGAATGGGAACTCCGCGCATTGGTTTTATTGAGCCTTTTCTTACAAATTGTGCTCATACTCTTGGGTAACAGGAGGAAATATATAGCTAGTAACTGGGTCAGAATCATCATTTGGCTGGCTTATTTAGCTGCAGATTGGATTGCAGCAGTCTGTATTGGCGTCCTGTCCAATGAGAATGGAGATGACAACTTATCACAACCAAACAGTTTGATATGGGCATTTTGGGCACCATTTCTGCTGCTGCACCTTGGCGGCCCGGATACCATTACAGCCTATTCATTGGAGGATAATGAATTATGGTTAAGACACTTTCTTGCACTAGTCATCCAGTTTGGAGGGACATTTTACATTTTTCTTAGGTCCTGGAAGGCCAAACTGCTTAATATTCTGGCCATTCCAATTTTTGTGGCTGGACTCATCAAGTATGGGGAAAGGACCTGGGTTCTAAGGTCTGCAAGCAGTGAGCAATTCAGAGATGCCCTGCTACCTCGTCCTGATCCAGGGCCTAATTATCCCAAATTCATGGATGAGTACACTTCAGGAAAAGCCGAGGGATATCAAGTTTCAATACAACAACGAGGTAAAACTTCTAGGACAGTGCATTCTCCTCCAGAAGGAGACATTTTGCGACAGGCTTATTACTTCTTCGAAACTTTCAAGGGTTTGTTTGCAGATATCATTCTTAGCTCCCAGAGGCGCAAAAGGAGCCACGGTGGTCAAGTAAAAACAAAAACAAAAACACAGCGTGCAACTGATCTCTGCTATGAGAATGATGCAGAGAAGAATCCAGATTGTAAAGCGTGCAAGGTGCTTTCTGATTATATGTTGTATCTTCTGGTCATGTGCCCTTTCATGCTGCCTGACGGAATTGGGGAGATTAGATATCGAGACAGCTGCGCCGAGGCTAAAGAATTCTTCAAGGATAGAAAGCACATAAAAAGTAGAACCCAAGCTTGCAAAGATTTACTGAGATGGGAGCTGATGAGGGGTGTGTGGGTGGAGATGCTATGTTACGCTGCAAGTCAATGTCGGCCGAATCAGCATGCCAAGCAGCTCAGGCGAGGCGGAGAGCTGCTCACTCATGTCTGGCTTCTCATGGCTCATCTTGATGTAAGAGAAAATTTCCAGATTTCACAAGGCAATGCAAAAGGTGGGATAATTGACATTTGCTTCCGTTTTAATTCAAATGTGAACAATACATATATTTCAGGTAATCCTCCTCCCATTATTGGTGGCTGCATCATGATTGATTTCACTCTTGATCTGTTGAAAGTGTTATACTCATATATAATTTTGTTAATTAATGGATCATGTAAATAA 1488 42.2 MRKVVSEVGIGSSVLIKPLICVCIYIFTVSGLSSMILVNKRRAMELFPESVTKLWNEWELRALVLLSLFLQIVLILLGNRRKYIASNWVRIIIWLAYLAADWIAAVCIGVLSNENGDDNLSQPNSLIWAFWAPFLLLHLGGPDTITAYSLEDNELWLRHFLALVIQFGGTFYIFLRSWKAKLLNILAIPIFVAGLIKYGERTWVLRSASSEQFRDALLPRPDPGPNYPKFMDEYTSGKAEGYQVSIQQRGKTSRTVHSPPEGDILRQAYYFFETFKGLFADIILSSQRRKRSHGGQVKTKTKTQRATDLCYENDAEKNPDCKACKVLSDYMLYLLVMCPFMLPDGIGEIRYRDSCAEAKEFFKDRKHIKSRTQACKDLLRWELMRGVWVEMLCYAASQCRPNQHAKQLRRGGELLTHVWLLMAHLDVRENFQISQGNAKGGIIDICFRFNSNVNNTYISGNPPPIIGGCIMIDFTLDLLKVLYSYIILLINGSCK* 496
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01031 495 Pfam Protein of unknown function, DUF594 380 426 IPR007658 -
Vivi19g01031 495 PANTHER OS01G0798800 PROTEIN-RELATED 48 292 - -
Vivi19g01031 495 Pfam Domain of unknown function (DUF4220) 94 293 IPR025315 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01031 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:20500225 Vivi5g01257 Vivi-Chr5:22951895 dispersed
Vivi Vivi-Chr19:20500225 Vivi19g01032 Vivi-Chr19:20515117 tandem