AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01042 | ATGAAGGAGAGTGGCAGGAAACAAGGTGCAGTTTCGCCATGCGCCGCATGCAAGCTTCTTCGCCGTAGATGTGCTCAGGACTGTGTCTTTGCTCCTTACTTTCCGGCTGATGAGCCACATAAGTTTGCCAGTGTGCACAAGGTGTTTGGAGCAAGCAATGTCAATAAGATGTTACAGGAGTTGCCGGAGCACCAGCGCAGTGATGCTGTGAGTTCCATGGTGTACGAAGCAAACGCCAGGGTGCGTGACCCGGTTTATGGCTGTGTTGGGGCCATATCGTCCCTGCAGCAACAGATCGACGCCCTTCAAACACAATTGGCACTGGTGCAGGCTGAAGTAGTGCAGATGAGAATGAACCAATTCACATCCTCAACCTCCAACCAAGCCACAGATTCACCAGAAAACGCCTCACACACATCCAGGCTTGCTGCATCTCCTCAGACCAAGTCCTTTTTTTCCATGGACATGGTGGTAGATCATGCCAATATGGTGGAGTCCCTTTGGTCATACTAG | 513 | 51.27 | MKESGRKQGAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFTSSTSNQATDSPENASHTSRLAASPQTKSFFSMDMVVDHANMVESLWSY* | 171 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01042 | 170 | Coils | Coil | 92 | 119 | - | - | |
| Vivi19g01042 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
| Vivi19g01042 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 138 | - | - | |
| Vivi19g01042 | 170 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
| Vivi19g01042 | 170 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01042 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr13:1310001 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr13:5001203 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr13:5028969 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr13:5072401 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr14:28646091 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr15:17253433 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr15:17260065 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr16:15894465 | Vivi19g01042 | Vivi-Chr19:20862597 | dispersed | |
| Vivi | Vivi-Chr19:20862597 | Vivi6g00738 | Vivi-Chr6:8584134 | dispersed | |
| Vivi | Vivi-Chr19:20862597 | Vivi13g00101 | Vivi-Chr13:1022036 | transposed | |
| Vivi | Vivi-Chr19:20862597 | Vivi6g00686 | Vivi-Chr6:7971774 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi7g00948 | . | 1 | 246 | AS2 family | AT3G49940 | 55.682 | 1.13e-84 | 250.0 | |
| Vivi7g00859 | . | 1 | 234 | AS2 family | AT5G66870 | 57.2 | 1.07e-79 | 243.0 | |
| Vivi7g00860 | . | 1 | 88 | AS2 family | AT5G66870 | 78.409 | 4.72e-46 | 150.0 | |
| Vivi7g00861 | . | 1 | 121 | AS2 family | AT5G66870 | 79.339 | 2.40e-66 | 205.0 | |
| Vivi17g00801 | . | 1 | 124 | AS2 family | AT5G63090 | 65.323 | 1.55e-47 | 150.0 | |
| Vivi17g00485 | . | 27 | 328 | AS2 family | AT3G47870 | 36.991 | 1.58e-51 | 171.0 | |
| Vivi18g00662 | . | 1 | 143 | AS2 family | AT3G49940 | 72.917 | 1.88e-70 | 213.0 | |
| Vivi16g00595 | . | 4 | 112 | AS2 family | AT3G26660 | 63.303 | 1.14e-49 | 154.0 | |
| Vivi1g00309 | . | 1 | 233 | AS2 family | AT1G68510 | 50.607 | 2.23e-71 | 216.0 | |
| Vivi13g00332 | . | 1 | 118 | AS2 family | AT5G06080 | 72.881 | 6.01e-60 | 184.0 | |
| Vivi16g00518 | . | 1 | 158 | AS2 family | AT5G66870 | 63.291 | 4.92e-63 | 197.0 | |
| Vivi19g01042 | . | 1 | 171 | AS2 family | AT1G31320 | 70.175 | 2.14e-73 | 216.0 | |
| Vivi6g00686 | . | 5 | 193 | AS2 family | AT2G30130 | 67.692 | 9.32e-83 | 240.0 | |
| Vivi15g00467 | . | 1 | 218 | AS2 family | AT4G00210 | 54.587 | 3.01e-72 | 216.0 | |
| Vivi15g00466 | . | 37 | 246 | AS2 family | AT2G45420 | 68.571 | 5.69e-84 | 250.0 | |
| Vivi7g00530 | . | 11 | 215 | AS2 family | AT3G58190 | 51.982 | 3.98e-70 | 212.0 | |
| Vivi7g00531 | . | 10 | 245 | AS2 family | AT2G42430 | 53.39 | 2.07e-72 | 217.0 | |
| Vivi8g00116 | . | 50 | 246 | AS2 family | AT3G03760 | 70.051 | 1.37e-80 | 242.0 | |
| Vivi14g01311 | . | 1 | 126 | AS2 family | AT5G63090 | 80.62 | 1.99e-68 | 205.0 | |
| Vivi14g01464 | . | 27 | 140 | AS2 family | AT3G47870 | 58.772 | 1.09e-43 | 148.0 | |
| Vivi13g00101 | . | 5 | 121 | AS2 family | AT2G30130 | 88.889 | 2.18e-75 | 220.0 | |
| Vivi3g00692 | . | 1 | 128 | AS2 family | AT3G49940 | 73.438 | 1.49e-66 | 203.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Vivi | LOB | 7.9e-44 | No_clan | TF | LOB |