AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01043 ATGTGGGGGGACGAAGGAGGGTTCTCATTGCTGGATTACCAAGTCCAGCCGGAGGTTGATGTTGGGGTGGCGGTTTCTGGGTTGGTTTTGCCGGAGCGGGGTGGGGTTTCGGACATGGCAGTGCCCGCGTTGCCGGAGTTCAACATGGGGGGTTTGTGCGGCATTGCCGGAGTTCAGAGCTTTGGGGGAGGGTACCAGCAAGATGTGTGTGAGTTTGGAGATGAATGCGGAGGGTTTGTGCCTGATTTCCGGCCGGTTTATCCTGCTACGGCGGGAGATAATTGGGGAATTCAAGGAAATCATATAGCAGGGATTGAAGAATCCAATACAAAGGTTGGGAGGTACTCAGTTGAGGAAAGGAAGGATAGAATTCTCAGATATTTGAAGAAGAGAAATCAAAGGAACTTCAACAAAACCATTAAGTACGCATGCCGGAAGACTCTGGCAGACAGGCGTGTCCGGGTCCGGGGGAGATTTGCAAGGAACAGCGAGCTATGCGAAGAAGAAATGGCAGTAAAGAAGAATGAAAACACACAAGAAGAGAAAGAACTATACTACAATGACACTGTGCAGATGAAGCATGATGAGGAGGACTGGCTGCAAGAAGCAATTGCAAGCCTCATGTATATGCCATATTTTTCTGGATGA 648 49.38 MWGDEGGFSLLDYQVQPEVDVGVAVSGLVLPERGGVSDMAVPALPEFNMGGLCGIAGVQSFGGGYQQDVCEFGDECGGFVPDFRPVYPATAGDNWGIQGNHIAGIEESNTKVGRYSVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNSELCEEEMAVKKNENTQEEKELYYNDTVQMKHDEEDWLQEAIASLMYMPYFSG* 216
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01043 215 Coils Coil 163 183 - -
Vivi19g01043 215 Pfam CCT motif 120 162 IPR010402 GO:0005515(InterPro)
Vivi19g01043 215 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515(InterPro)
Vivi19g01043 215 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 104 180 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01043 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:20911181 Vivi5g00777 Vivi-Chr5:9257999 dispersed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi12g00590 . 4 74 C2C2-CO-like Transcription Factor family AT5G54470 74.648 3.38e-33 119.0
Vivi1g01326 . 147 401 C2C2-CO-like Transcription Factor family AT2G33500 39.583 4.90e-46 160.0
Vivi18g01041 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 52.096 7.61e-102 300.0
Vivi7g00220 . 20 328 C2C2-CO-like Transcription Factor family AT2G47890 48.256 1.45e-90 272.0
Vivi1g00370 . 261 372 C2C2-CO-like Transcription Factor family AT3G07650 41.228 1.28e-14 67.8
Vivi1g00369 . 10 267 C2C2-CO-like Transcription Factor family AT1G68190 39.244 7.11e-68 216.0
Vivi19g00032 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 54.902 2.34e-96 284.0
Vivi19g00324 . 4 168 C2C2-CO-like Transcription Factor family AT5G54470 49.162 2.67e-38 133.0
Vivi4g01083 . 1 156 C2C2-CO-like Transcription Factor family AT4G38960 63.388 3.23e-78 229.0
Vivi2g00020 . 281 331 C2C2-CO-like Transcription Factor family AT5G57660 52.941 1.23e-10 59.3
Vivi19g01043 . 306 391 C2C2-CO-like Transcription Factor family AT5G24930 36.735 1.93e-10 57.8
Vivi3g00045 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 62.857 8.10e-91 262.0
Vivi3g00018 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.515 9.09e-68 211.0
Vivi6g00364 . 278 342 C2C2-CO-like Transcription Factor family AT5G15850 40.0 5.26e-12 63.2
Vivi5g00777 . 208 276 C2C2-CO-like Transcription Factor family AT2G24790 42.105 2.49e-10 58.9
Vivi11g01077 . 60 318 C2C2-CO-like Transcription Factor family AT5G57660 43.939 2.85e-53 174.0
Vivi12g00737 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.841 8.94e-155 440.0
Vivi4g00625 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 57.851 1.99e-129 373.0
Vivi14g00959 . 1 347 C2C2-CO-like Transcription Factor family AT3G02380 61.333 4.58e-149 426.0
Vivi18g01787 . 1 204 C2C2-CO-like Transcription Factor family AT1G78600 41.905 7.85e-53 169.0
Vivi16g00913 . 185 332 C2C2-CO-like Transcription Factor family AT5G15850 29.878 1.47e-11 62.4
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi CCT 1.4e-16 CL0281 TR Others