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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01054 ATGCTAAATTTAGCTGAACAATGGGGATGGACTGGCAATGACACTGAAACTCATCTGGGAAAACTTCTGAAGCAAATGATCGATGAGAGTGACCCTAAATTACCATTTGGATACATCAAATTGGATGAGGTAGCAAGCCGTGCAAAAATAAACTCTCCTCCCCTCATGACCATGATGAGCGCCCTGAACAAGGAGGGATATGCTGTTAGCAGGTCACACATTGCCTCCAACGCAATTAAGACAAACTGCCCAATGGCAGTCTCCATTAGGATTGCAAAGGAACTTCAGCAATGTTGA 297 44.11 MLNLAEQWGWTGNDTETHLGKLLKQMIDESDPKLPFGYIKLDEVASRAKINSPPLMTMMSALNKEGYAVSRSHIASNAIKTNCPMAVSIRIAKELQQC* 99
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01054 98 FunFam tRNA (guanine(26)-N(2))-dimethyltransferase 35 94 - -
Vivi19g01054 98 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 5 93 IPR029063 -
Vivi19g01054 98 Pfam N2,N2-dimethylguanosine tRNA methyltransferase 14 90 IPR002905 GO:0003723(InterPro)|GO:0008033(InterPro)|GO:0016423(InterPro)
Vivi19g01054 98 Gene3D - 35 95 IPR042296 -
Vivi19g01054 98 ProSiteProfiles Trm1 methyltransferase domain profile. 1 92 IPR002905 GO:0003723(InterPro)|GO:0008033(InterPro)|GO:0016423(InterPro)
Vivi19g01054 98 PANTHER N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE 1 95 IPR002905 GO:0002940(PANTHER)|GO:0003723(InterPro)|GO:0004809(PANTHER)|GO:0005634(PANTHER)|GO:0008033(InterPro)|GO:0016423(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01054 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:17530264 Vivi19g01054 Vivi-Chr19:21197352 dispersed
Vivi Vivi-Chr19:21197352 Vivi5g00178 Vivi-Chr5:1782798 dispersed