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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01060 ATGCTTTTTGATTGGAAAAATGAGAAATATGTCTTCGCAAAGCCAGGAAGAAGTATGTGTTTTACCCCAATCTCTATATATGCTTTGGAATCTAAAAACAAGAATGCCAAGCTCTTCAATTGTGTCCAAAGAGGGCATCAGAACTCAGTGGAAATGATGCCAATTTTCTTCATGCTGATGATATTAGGAGGAATTAGATATCCTGTTGCATGTGTTGATCTTGGGTCCCTATACACTTAG 240 37.5 MLFDWKNEKYVFAKPGRSMCFTPISIYALESKNKNAKLFNCVQRGHQNSVEMMPIFFMLMILGGIRYPVACVDLGSLYT* 80
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01060 79 PANTHER MICROSOMAL GLUTATHIONE S-TRANSFERASE 23 79 IPR050997 GO:0004364(PANTHER)|GO:0004602(PANTHER)|GO:0005635(PANTHER)|GO:0005783(PANTHER)
Vivi19g01060 79 Pfam MAPEG family 30 68 IPR001129 GO:0016020(InterPro)
Vivi19g01060 79 Gene3D - 6 79 IPR023352 -
Vivi19g01060 79 SUPERFAMILY MAPEG domain-like 35 78 IPR023352 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01060 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:21399795 Vivi4g00741 Vivi-Chr4:12133777 dispersed