AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01073 ATGGCTGTGGAAGCTTGTGTTAATCCGAAAATGTTTAATAACGAGGTAGACGACGACGATGATGACGAGAGGCCATTAGTTTTCAAAAGGAGTAGTAACAGTTCAGCTTCAAATAATAATTCCAGGCTTAAAATTCAATCCATTTCGGGTTCAAAACGGCCTGATGATGCCCATTCCAATGGGCAAAAGAAGGACAAGGGAATGGCCCCGCCCATGCCTGCCAAGGGATCGGGGCGGGTGACGGGGTCAGTTAAGTCGCCGCCGCAGCAGGTGGGCAGGGGGGTAGTGGTGGGTAATTCAAAAGTGGAGGCGCAAAATAAAAAGGCTGAATTGGATAGCGATTCTGAGGATGATAAACCACTTAGTGTTAGGCTTTCTTCTGGGTTGCCAAAGGGGAAGGGGAGCTCTAACAATGTCGGTTTGGGAAGAGGGGGGGTTGGTGGTGTCAAGAAGGAAGAGGATGATGATGACGATGATAAAATTCCATTGTCATCGAAGTTCCAACTGAAATCGGATGAGAAGAAGCCTCTGCCTTTGAAAGTTAATCAAAATGGTGGAACTGATAAGAGGGATAAGTCTCCCACAGTGCTAAATAAGAAGAGACCTCTAGATGGGGTTAATTCTTCTTTGGGTCAGTCTTCGCTGGTTAAAAAGCCAAAGATTTCTGGTCAATCTGCACAGCCATTCAAAGTTACGCATGCAACTGCAAAAGCAGAACCGAAGGTGGAAGATGATGATGATGACGATATGCCTATTTCCCAGAGAATGAAGAAATCAGGAGCTAGCTCAGGCAACAAACCAGTGCCAGCAAAGCAAAAGGTAACAAAAGTTGTTTCTTCTACTTCGTTTAAGAAAACCAAAGACATCAAGTCCAAGAAGATGGAGAAAAATTCGAAATACTCTAAGTCGACAAAAGTGCCACCTAGCTCTGGTGAAGGGCAGAAGTGGACTACCTTGGTTCATAATGGTGTCATTTTTCCGCCTCCGTACAAGCCTCATGGGGTGAAGATGCTCTACAAGGGGAAACCAGTTGACTTGACTCCTGAACAAGAGGAGGTTGCCACAATGTTTGCTGTGATGTTAGACACGGACTACATGCAAAAAGAGAAATTCAAGGAGAATTTCATGGCTGATTGGAGAAAAATACTTGGAAAGAACCATGTGATTCAGAGACTGGATGATTGTGATTTCACTCCTATATACGAATGGCATCAGGAGGAAAAGGAAAAGAAAAAACAAATGAGTACTGAAGAGAAGAAGACCTTAAAAGAAGAGAAATTGAAACTAGAGGAGAAATATATGTGGGCTATTGTTGATGGTGTCAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCCCCTGGGTTGTTCCGAGGCCGTGGGGAGCATCCAAAGATGGGAAAGCTGAAAAGACGGATTCATCCAAGTGACATTACTATTAATATTGGAAAGAACTCTCAAATTCCTGAATGTCCTATACCTGGTGAAAGCTGGAAAGAAGTAAAGCACGACAATACTGTTACATGGTTAGCTTTCTGGAATGATCCAATCAACCCAAAGGAATTCAAGTATGTATTTTTGGCGGCTAGCAGTTCCTTGAAGGGTCAAAGCGACAAGGAGAAATATGAGAAAGCAAGGAAACTAAAGAACTATATAAAAGACATCAGAGCAACATACACTAAGGATTTTGTAAGTAAAGATATTACAAAGCGGCAGATAGCAGTTGCCACCTATCTTATTGATAAACTAGCTCTAAGGGCAGGCAATGAGAAGGATGATGATGAGGCGGATACTGTTGGTTGCTGTACCTTGAAAGTAGAAAATGTAATACCTGAACCGCCAAATTCCTTGCAGTTTGATTTCCTCGGTAAAGATTCAATTAGATATGAAAAGACAGTTGAAGTTGAGCTTCCTGTATACAAGGCAATTGAACAGTTCCGAGTGGGGAAAAGTGGTAGTGATGATCTTTTTGACAAGCTGGATACCAGTAAACTAAATGCTCATCTAAAGGAACTAATGCCGGGCCTCACAGCAAAGGTTTTCCGTACATATAATGCATCTATCACGTTGGATGAGATGTTGAATAAAGACACCAAGGAAGGAGATGTTGCACAGAAAGTTGTAGTTTATCAGCATGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGGACTATCTCGAAGTCTCATACAGCACAAATGACAAGGTTGACTGAGAAGATAGATGAAATGAAGGGTGTTCTTAATGGGCTGAAAACAGATTTAGCTAGAGCCAAGAAGGGGAAGCCCCCTTTGAAGGATGCTGATGGGAAGCGAAGGAACCTGACCCCTGAAGCATTAGAGAGGAAGATAGCTCAAACAAATGCAAAGATTGAGAAAATGGAGCGGGACAAGGATACGAAAGAGGATCTAAAAACTGTTGCATTGGGTACCTCAAAGATCAACTACCTTGACCCCAGGATCTCAGTTGCATGGTGTAAACGACAGGAAGTTCCCATTGAGAAGGTATTCAATAAGTCTCTCCTGGCAAAATTTGCCTGGGCAATGGACGTTCCTCCGGATTTCAGATTCTGA 2574 42.77 MAVEACVNPKMFNNEVDDDDDDERPLVFKRSSNSSASNNNSRLKIQSISGSKRPDDAHSNGQKKDKGMAPPMPAKGSGRVTGSVKSPPQQVGRGVVVGNSKVEAQNKKAELDSDSEDDKPLSVRLSSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSKFQLKSDEKKPLPLKVNQNGGTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPLKDADGKRRNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF* 858
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01073 857 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 803 821 IPR018521 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 MobiDBLite consensus disorder prediction 205 231 - -
Vivi19g01073 857 Pfam Eukaryotic DNA topoisomerase I, catalytic core 529 753 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 FunFam DNA topoisomerase I 398 526 - -
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 455 464 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 571 590 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 594 608 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 616 632 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 674 688 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 PRINTS Eukaryotic DNA topoisomerase I signature 810 821 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 Gene3D - 678 857 IPR014727 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 FunFam DNA topoisomerase I 529 677 - -
Vivi19g01073 857 FunFam DNA topoisomerase I 678 857 - -
Vivi19g01073 857 PANTHER DNA TOPOISOMERASE I 51 857 IPR051062 GO:0003917(PANTHER)|GO:0005730(PANTHER)|GO:0006260(PANTHER)|GO:0006265(PANTHER)|GO:0007059(PANTHER)
Vivi19g01073 857 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 313 528 IPR036202 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 MobiDBLite consensus disorder prediction 105 121 - -
Vivi19g01073 857 Coils Coil 405 432 - -
Vivi19g01073 857 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 314 526 IPR008336 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 CDD Topo-IB-C 535 728 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 SMART topeu 455 830 IPR013499 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 Gene3D DNA Topoisomerase I, domain 2 310 526 IPR013030 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 SUPERFAMILY DNA breaking-rejoining enzymes 529 854 IPR011010 GO:0003677(InterPro)
Vivi19g01073 857 MobiDBLite consensus disorder prediction 1 314 - -
Vivi19g01073 857 Coils Coil 777 804 - -
Vivi19g01073 857 MobiDBLite consensus disorder prediction 283 300 - -
Vivi19g01073 857 FunFam DNA topoisomerase I 330 414 - -
Vivi19g01073 857 Pfam C-terminal topoisomerase domain 789 857 IPR025834 -
Vivi19g01073 857 Coils Coil 734 754 - -
Vivi19g01073 857 Gene3D Topoisomerase I; Chain A, domain 3 529 677 IPR014711 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 Gene3D - 331 414 IPR013034 GO:0003917(InterPro)|GO:0006265(InterPro)
Vivi19g01073 857 MobiDBLite consensus disorder prediction 147 177 - -
Vivi19g01073 857 MobiDBLite consensus disorder prediction 256 282 - -
Vivi19g01073 857 MobiDBLite consensus disorder prediction 29 55 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01073 K03163 DNA topoisomerase I [EC:5.6.2.1]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr12:5298228 Vivi19g01073 Vivi-Chr19:21696838 dispersed