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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01076 ATGAACTTACTTCAACTGTTATTTCCTTATTTGGAGGAGTTTGAGGTCAGGAATTGTTCAAATTTGGAAGATGTGACGTTCAATTTGGAAAAGGAAGTCCATTCAACATTCCCAAGGCATCAATACTTATACCATCTTGCTCATGTAAGGATAGTATCCTATGAAAATTTGATGAAATTGACATGCCTTATTTATGCTCCAAATCTTAAGTCTCTATTCATTGAGAACTGTGACTCTTTGGAAGAAGTGATAGAAGTTGACGAGTCTGGAGTTTCAGAAATTGAATCTGACTTGGGCCTGTTTTCAAGACTTACTCATCTCCATATGCGGATTCTACAAAAGCTAAGGAGTATATGCGGATGGAGCTTACTCTTTCCTTCCTTAAAGGTGATTCATGTGGTTAGATGTCCGAATTTGAGGAAACTACCTTTTGATTCCAACGTCGGGATTAGTAAGAATTTAGAGGAAATCGAGGGAGAAGGAGAATGGTGGGACGAGTTGGAGTGGGAGAATCAAACCATTATGCACAACCTCGCTCCATATTTCAAGCCTCTATAG 558 38.89 MNLLQLLFPYLEEFEVRNCSNLEDVTFNLEKEVHSTFPRHQYLYHLAHVRIVSYENLMKLTCLIYAPNLKSLFIENCDSLEEVIEVDESGVSEIESDLGLFSRLTHLHMRILQKLRSICGWSLLFPSLKVIHVVRCPNLRKLPFDSNVGISKNLEEIEGEGEWWDELEWENQTIMHNLAPYFKPL* 186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01076 185 SUPERFAMILY L domain-like 7 161 - -
Vivi19g01076 185 Gene3D Ribonuclease Inhibitor 2 161 IPR032675 -
Vivi19g01076 185 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 8 145 IPR050905 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01076 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:21764901 Vivi19g01080 Vivi-Chr19:21839338 dispersed
Vivi Vivi-Chr19:21721560 Vivi19g01076 Vivi-Chr19:21764901 tandem