AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01081 ATGGTACTTGCATGCCTGTTGACGTCTGATGAATCTCACGGACGTGTGAAAATGCATGATGTCATTCGTGATATGGCTTTGTGGATAGCTTGTGAAAATGGGAAGAAGAAGAACAAATTTGTGGTAAAAGAGCAAGTTGAATTGATTAAAGGCCATGAAATTACAAAATGGAAGAACGCACAAAGGATATCAGTTTGGAATAGTGGTATCGAAGAACGCATGGCACCACCACCTTTTCCTAATCTTGAGACTCTGTTGTCAGTGGGTGGATTGATGAAGCCATTTCTAAGTGGGTTCTTTAGATATATGCCTGTCATAAGAGTGTTGGCCTTGGTAGAAAACTATGAACTGACGGAGTTACCTGTGGAGATTGGTGAATTGGTTACATTGCAGTATCTTAATTTATCACTCACGGGAATAAAAGAGTTACCAATGGAGCTTAAGAAATTGACAAAACTGAGGTGCTTGGTATTGGATGACATGCTTGGACTTAAAACAATTCCACATCAAATGATATCAAGTCTTTCATCTTTGGAATCGTTCAGTTTTTACAATTCTGGAGCCACCATTGGAGATTGCAGTGCCTTATTAGAGGAGTTAGAGAGCTTGGAACACCTGAACGAGATATTCATCACACTTAGAAGTGTCACTCCTGTAAAAAGATTACTGAACTCTCACAAGTTACGAAGGGGCATAAATCGGCTACATGTAGAATCCTGCAACCACCTGAGCTCACTCAATGTGTACCCTTATCTGCAGAAACTTGAAATAAACATATGTGATGACTTGGAAGATGTGAAATTCATTGTGGAAAAGGAAAGGGGTGGGGGATTTGCAGCATATAATGTGGTCCAATCAAACATGGCAAAGCACCAAAACTTCTGCTATCTTCGTCATGTAGCGATATGTCATTGTCCAAAATTATTGAACTTAACATGGTTTATTTATGCTACACGCCTTCAATTCCTTAATGTTAGTTTCTGTGATTCAATGGAAGAAGTGGTAGAAGATAAAAAGAATGGAGTTTCAGAAATTCAGCAAGAGTTAGGCCTATTCTCAAGACTCGTATCTCTCCATTTGTCTTGTCTACCAAATCTAAGGAGAATATATAGAAGGCCTCTACAATTTCCTTCCCTAAAAGAGATGACTGTTAAATACTGTCCAAATCTGGGGAAGCTGCCATTTGATTCCAAAGCTGGGATTAGTAACAGTTTACAGAAGATCCATGGAGCCCAGGAATGGTGGGATGGGCTAGAGTGGGAGGACCAAACCATTATGCAAAACCTCATCCCATACTTCGTTCCGATTCTGGTCTTCGCGATCACGATTGAGGTGTGA 1338 40.13 MVLACLLTSDESHGRVKMHDVIRDMALWIACENGKKKNKFVVKEQVELIKGHEITKWKNAQRISVWNSGIEERMAPPPFPNLETLLSVGGLMKPFLSGFFRYMPVIRVLALVENYELTELPVEIGELVTLQYLNLSLTGIKELPMELKKLTKLRCLVLDDMLGLKTIPHQMISSLSSLESFSFYNSGATIGDCSALLEELESLEHLNEIFITLRSVTPVKRLLNSHKLRRGINRLHVESCNHLSSLNVYPYLQKLEINICDDLEDVKFIVEKERGGGFAAYNVVQSNMAKHQNFCYLRHVAICHCPKLLNLTWFIYATRLQFLNVSFCDSMEEVVEDKKNGVSEIQQELGLFSRLVSLHLSCLPNLRRIYRRPLQFPSLKEMTVKYCPNLGKLPFDSKAGISNSLQKIHGAQEWWDGLEWEDQTIMQNLIPYFVPILVFAITIEV* 446
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01081 445 Gene3D Ribonuclease Inhibitor 32 272 IPR032675 -
Vivi19g01081 445 Gene3D Ribonuclease Inhibitor 293 408 IPR032675 -
Vivi19g01081 445 SUPERFAMILY L domain-like 6 409 - -
Vivi19g01081 445 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 5 396 IPR050905 -
Vivi19g01081 445 Coils Coil 328 348 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01081 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:21850794 Vivi9g00475 Vivi-Chr9:5737378 dispersed
Vivi Vivi-Chr19:21850794 Vivi19g01083 Vivi-Chr19:21874071 proximal
Vivi Vivi-Chr19:21839338 Vivi19g01081 Vivi-Chr19:21850794 tandem