AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01086 | ATGTCAGTGTTGATAGTGACGAGTTTGGGGGACATAGTGGTGGATTTGTACACAGATCGCTGTCCTCTCACCTCCAAGAACTTCTTAAAGCTCTGCAAGATCAAATATTACAATGGTTGTCTGTTTCACATGGTTCAGAAGGATTTTACGGCACAGACTGGTGACCCGACTGCAACGGGGACTGGTGGTGATTCTATCTACAAATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATCTTAATGCTTCTCAGTTCTATTTCACGCTGCGTGATGATCTAGACTACCTGGATGGAAAGCATACTGTTTTTGGTGAGGTTGCAGAAGGGCTTGAGACACTAACGAGGATAAATGAAGCTTATGTGGATGATAAAGGGAGACCATATAAAAATATCCGAATCAAACACACTTATATATTGGATGATCCTTTTGGTGATCCTTCCCAGCTCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATTCTCGTGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATAAAGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATCGGCGGAAATTATCCGTGATTTCAAGACTGGAGACAGTTTATGCTATGCTTTCATTGAATTTGAGACCAATGAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCGTTAATTGATGACCGGAGAATACATGTGGATTTCAGTCAAAGTGTTTCAAAACTGTGGTCCCAATACAGGCGCAGAGATCACCAAACGGGCAAAGGAACAGGTTGCTTCAAATGTGGTGCAGTCGACCACATTGCCAAGGATTGTACTGGGAGCCCCACCAAGCAACAACAACCTCCAAAATACATCTTAAAAGACAACAACACTCAGCATGGTGGAGATAATAACTCTAGGTATGAAATGGTTTTTGATGAAGACACCTCAGAAAGTCCAAAACGAGAAAAGAGACGCCAGGACCATGGACCTGAAGATCAAATTGAGAAAGAAAAACTGAACAGGCGAGGTTCAGAAGACTGGAAACGTAGGGACCATGACAAGAAAGACTCTGATGATAGGCATAGGCAGAGTGACAAGGGCCAAGAAAGTAGAGCAAGTCGCTTGAGTGGGAGCAGAAGAGACCCATATCATCATGAAGAGAGAATTGACAGAGAAAAACATAGAGAGAGGCAAGACGAAGGAAAAAGAGAGAGAGATGAGCGGGACTATAGAAAGAGAAATGCAGATAGTGATAGCCATAGAGAGAGGAGGGACGGGAGAGACGAACGGCACCACAGAAAGAGAAATGCAGATGGTGATAGGCATGTAGATAGAAGGGATGTTGGGGATTATAGAAAGAGAGATACAGATGATGATGACCATGGAGATGGAAGGGATGGCAGAGATTACAGAAAGAGAAGCGCTGACAATGATGGGCGTGGGGATAGGAGGGATGACAGAGATCACAGAAAGACAAAAGCTGATGAAGACAGAAGGGACAAGAGGGACATGAGGGACGAGCCAAGCTACAGAAAGAGAAGTGCTGATGGTGATGGCAATGGAGGAAGGAGGGAAGAGCGAGGTCATAAAAGGCATAGCACGGAAAGCAATGATGATCGTGATAGAAGGCACCGAGGTGACCGGAGGGAACCTGAGGAGGACCCCTGA | 1902 | 44.37 | MSVLIVTSLGDIVVDLYTDRCPLTSKNFLKLCKIKYYNGCLFHMVQKDFTAQTGDPTATGTGGDSIYKFLYGDQARFFNDEVHLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDDKGRPYKNIRIKHTYILDDPFGDPSQLTELIPDASPEGKPKDEVDDDVRLEDDWVPLDEQLDTSELEELIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVISAEIIRDFKTGDSLCYAFIEFETNEACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRRDHQTGKGTGCFKCGAVDHIAKDCTGSPTKQQQPPKYILKDNNTQHGGDNNSRYEMVFDEDTSESPKREKRRQDHGPEDQIEKEKLNRRGSEDWKRRDHDKKDSDDRHRQSDKGQESRASRLSGSRRDPYHHEERIDREKHRERQDEGKRERDERDYRKRNADSDSHRERRDGRDERHHRKRNADGDRHVDRRDVGDYRKRDTDDDDHGDGRDGRDYRKRSADNDGRGDRRDDRDHRKTKADEDRRDKRDMRDEPSYRKRSADGDGNGGRREERGHKRHSTESNDDRDRRHRGDRREPEEDP* | 634 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01086 | 633 | CDD | RRM-PPIL4 | 240 | 322 | - | - | |
| Vivi19g01086 | 633 | SUPERFAMILY | RNA-binding domain, RBD | 229 | 338 | IPR035979 | GO:0003676(InterPro) | |
| Vivi19g01086 | 633 | SMART | rrm1-1 | 244 | 317 | IPR000504 | GO:0003723(InterPro) | |
| Vivi19g01086 | 633 | SMART | c2hcfinal6 | 341 | 357 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Vivi19g01086 | 633 | MobiDBLite | consensus disorder prediction | 384 | 633 | - | - | |
| Vivi19g01086 | 633 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 172 | - | - | |
| Vivi19g01086 | 633 | Gene3D | - | 1 | 173 | IPR029000 | - | |
| Vivi19g01086 | 633 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 92 | 107 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 121 | 136 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | ProSiteProfiles | Zinc finger CCHC-type profile. | 342 | 355 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Vivi19g01086 | 633 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase-CLD | 4 | 159 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 243 | 321 | IPR000504 | GO:0003723(InterPro) | |
| Vivi19g01086 | 633 | Pfam | Zinc knuckle | 341 | 356 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Vivi19g01086 | 633 | SUPERFAMILY | Cyclophilin-like | 1 | 177 | IPR029000 | - | |
| Vivi19g01086 | 633 | CDD | cyclophilin-RRM | 4 | 169 | IPR035538 | - | |
| Vivi19g01086 | 633 | MobiDBLite | consensus disorder prediction | 356 | 382 | - | - | |
| Vivi19g01086 | 633 | FunFam | Peptidyl-prolyl cis-trans isomerase | 182 | 323 | - | - | |
| Vivi19g01086 | 633 | MobiDBLite | consensus disorder prediction | 356 | 633 | - | - | |
| Vivi19g01086 | 633 | Pfam | RNA recognition motif | 245 | 315 | IPR000504 | GO:0003723(InterPro) | |
| Vivi19g01086 | 633 | Gene3D | - | 235 | 344 | IPR012677 | - | |
| Vivi19g01086 | 633 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | 1 | 514 | IPR035542 | GO:0005634(PANTHER) | |
| Vivi19g01086 | 633 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 161 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Vivi19g01086 | 633 | SUPERFAMILY | Retrovirus zinc finger-like domains | 327 | 363 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01086 | K12735 | peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr19:21920857 | Vivi7g00920 | Vivi-Chr7:15331693 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi7g00920 | . | 1 | 595 | U-box gene family | AT5G67530 | 75.042 | 0.0 | 907.0 | |
| Vivi7g00928 | . | 1 | 101 | U-box gene family | AT5G67530 | 80.198 | 4.36e-56 | 181.0 | |
| Vivi7g00972 | . | 5 | 698 | U-box gene family | AT5G67340 | 53.957 | 0.0 | 711.0 | |
| Vivi1g01302 | . | 297 | 494 | U-box gene family | AT5G67530 | 38.739 | 5.15e-35 | 130.0 | |
| Vivi1g01372 | . | 27 | 807 | U-box gene family | AT1G76390 | 28.342 | 2.69e-52 | 195.0 | |
| Vivi13g00826 | . | 122 | 508 | U-box gene family | AT1G20780 | 27.835 | 1.62e-27 | 116.0 | |
| Vivi17g00812 | . | 22 | 180 | U-box gene family | AT5G65500 | 33.333 | 1.47e-16 | 76.6 | |
| Vivi17g00043 | . | 542 | 799 | U-box gene family | AT2G23140 | 26.996 | 1.33e-13 | 71.6 | |
| Vivi18g00243 | . | 348 | 587 | U-box gene family | AT3G46510 | 26.389 | 1.60e-10 | 64.3 | |
| Vivi18g00622 | . | 1 | 140 | U-box gene family | AT5G65920 | 67.333 | 1.39e-69 | 216.0 | |
| Vivi18g00651 | . | 498 | 825 | U-box gene family | AT2G23140 | 47.734 | 6.27e-88 | 281.0 | |
| Vivi18g00753 | . | 237 | 433 | U-box gene family | AT1G04510 | 26.267 | 4.82e-13 | 68.9 | |
| Vivi18g00956 | . | 48 | 661 | U-box gene family | AT4G36550 | 36.422 | 1.76e-104 | 332.0 | |
| Vivi18g01102 | . | 54 | 656 | U-box gene family | AT5G42340 | 64.145 | 0.0 | 757.0 | |
| Vivi18g01121 | . | 236 | 569 | U-box gene family | AT1G23030 | 25.538 | 9.32e-16 | 80.9 | |
| Vivi18g01122 | . | 432 | 477 | U-box gene family | AT5G67530 | 52.174 | 3.83e-10 | 51.6 | |
| Vivi1g01007 | . | 208 | 1033 | U-box gene family | AT1G68940 | 56.048 | 0.0 | 940.0 | |
| Vivi1g01184 | . | 1 | 733 | U-box gene family | AT1G24330 | 67.027 | 0.0 | 978.0 | |
| Vivi7g00107 | . | 333 | 554 | U-box gene family | AT1G23030 | 27.897 | 1.08e-14 | 75.9 | |
| Vivi8g00234 | . | 8 | 373 | U-box gene family | AT2G35930 | 52.861 | 9.19e-129 | 374.0 | |
| Vivi8g00235 | . | 8 | 376 | U-box gene family | AT2G35930 | 52.973 | 5.22e-132 | 380.0 | |
| Vivi14g01600 | . | 1 | 1038 | U-box gene family | AT5G15400 | 78.095 | 0.0 | 1644.0 | |
| Vivi1g00531 | . | 8 | 229 | U-box gene family | AT1G66160 | 47.788 | 1.96e-68 | 219.0 | |
| Vivi1g00458 | . | 374 | 528 | U-box gene family | AT2G28830 | 32.704 | 6.91e-09 | 57.8 | |
| Vivi1g00412 | . | 14 | 620 | U-box gene family | AT1G71020 | 64.668 | 0.0 | 754.0 | |
| Vivi18g00075 | . | 1 | 377 | U-box gene family | AT1G76390 | 65.879 | 3.19e-167 | 496.0 | |
| Vivi16g00323 | . | 516 | 742 | U-box gene family | AT2G23140 | 32.773 | 1.05e-21 | 99.4 | |
| Vivi16g00360 | . | 21 | 833 | U-box gene family | AT4G25160 | 56.985 | 0.0 | 902.0 | |
| Vivi19g00122 | . | 9 | 191 | U-box gene family | AT3G07370 | 27.869 | 2.86e-09 | 57.0 | |
| Vivi19g00261 | . | 257 | 460 | U-box gene family | AT1G04510 | 26.872 | 9.60e-08 | 53.5 | |
| Vivi11g00310 | . | 225 | 330 | U-box gene family | AT1G71020 | 42.991 | 1.22e-19 | 92.8 | |
| Vivi13g00546 | . | 39 | 626 | U-box gene family | AT3G54850 | 64.286 | 0.0 | 745.0 | |
| Vivi9g00019 | . | 734 | 800 | U-box gene family | AT2G28830 | 46.465 | 1.37e-16 | 80.9 | |
| Vivi9g00383 | . | 183 | 407 | U-box gene family | AT2G33340 | 26.106 | 1.32e-11 | 62.0 | |
| Vivi5g00464 | . | 354 | 603 | U-box gene family | AT3G46510 | 26.117 | 5.53e-14 | 73.6 | |
| Vivi5g00592 | . | 27 | 766 | U-box gene family | AT1G76390 | 27.867 | 2.46e-43 | 168.0 | |
| Vivi15g00334 | . | 560 | 742 | U-box gene family | AT2G23140 | 35.979 | 3.76e-19 | 90.5 | |
| Vivi4g00984 | . | 10 | 707 | U-box gene family | AT4G36550 | 37.949 | 5.26e-137 | 419.0 | |
| Vivi1g00885 | . | 346 | 497 | U-box gene family | AT5G67530 | 27.108 | 1.87e-10 | 58.2 | |
| Vivi1g00734 | . | 1 | 686 | U-box gene family | AT1G60190 | 45.036 | 0.0 | 570.0 | |
| Vivi19g01086 | . | 350 | 501 | U-box gene family | AT5G67530 | 40.0 | 4.13e-29 | 120.0 | |
| Vivi10g00204 | . | 439 | 717 | U-box gene family | AT1G67530 | 28.269 | 8.13e-18 | 84.3 | |
| Vivi10g00256 | . | 19 | 729 | U-box gene family | AT1G29340 | 59.58 | 0.0 | 766.0 | |
| Vivi7g01115 | . | 342 | 599 | U-box gene family | AT1G71020 | 30.147 | 2.40e-09 | 60.5 | |
| Vivi3g00278 | . | 53 | 660 | U-box gene family | AT5G42340 | 62.46 | 0.0 | 751.0 | |
| Vivi3g00142 | . | 353 | 491 | U-box gene family | AT5G67530 | 41.333 | 1.41e-27 | 107.0 | |
| Vivi16g00156 | . | 375 | 429 | U-box gene family | AT4G36550 | 36.364 | 3.22e-06 | 43.1 | |
| Vivi6g00640 | . | 26 | 805 | U-box gene family | AT1G76390 | 30.05 | 1.60e-92 | 311.0 | |
| Vivi6g00626 | . | 353 | 475 | U-box gene family | AT5G67530 | 47.015 | 2.82e-29 | 112.0 | |
| Vivi6g00433 | . | 45 | 830 | U-box gene family | AT2G45910 | 38.177 | 2.13e-179 | 535.0 | |
| Vivi6g00428 | . | 1 | 336 | U-box gene family | AT3G46510 | 65.875 | 3.56e-155 | 449.0 | |
| Vivi6g00123 | . | 230 | 465 | U-box gene family | AT1G23030 | 26.335 | 2.42e-16 | 82.0 | |
| Vivi4g00791 | . | 1 | 460 | U-box gene family | AT3G07360 | 58.28 | 0.0 | 524.0 | |
| Vivi4g01266 | . | 289 | 409 | U-box gene family | AT5G09800 | 65.574 | 9.82e-50 | 167.0 | |
| Vivi15g00162 | . | 5 | 124 | U-box gene family | AT3G52450 | 44.167 | 1.77e-27 | 103.0 | |
| Vivi15g00164 | . | 5 | 123 | U-box gene family | AT3G52450 | 42.857 | 5.32e-26 | 99.8 | |
| Vivi15g00857 | . | 1 | 832 | U-box gene family | AT2G45910 | 53.401 | 0.0 | 937.0 | |
| Vivi15g00661 | . | 242 | 497 | U-box gene family | AT2G33340 | 26.148 | 9.14e-09 | 56.2 | |
| Vivi15g00649 | . | 28 | 807 | U-box gene family | AT1G76390 | 29.658 | 4.29e-69 | 245.0 | |
| Vivi15g00552 | . | 490 | 747 | U-box gene family | AT3G54790 | 30.597 | 1.77e-19 | 90.1 | |
| Vivi15g00541 | . | 333 | 500 | U-box gene family | AT5G67530 | 49.405 | 6.86e-55 | 181.0 | |
| Vivi5g00778 | . | 1 | 513 | U-box gene family | AT2G33340 | 77.842 | 0.0 | 837.0 | |
| Vivi7g00361 | . | 324 | 588 | U-box gene family | AT1G23030 | 22.593 | 2.85e-07 | 51.2 | |
| Vivi7g00479 | . | 353 | 494 | U-box gene family | AT5G67530 | 46.575 | 1.79e-32 | 122.0 | |
| Vivi7g00570 | . | 46 | 707 | U-box gene family | AT5G67340 | 42.522 | 2.82e-166 | 489.0 | |
| Vivi16g00790 | . | 9 | 94 | U-box gene family | AT3G07370 | 29.07 | 8.92e-06 | 45.1 | |
| Vivi16g00716 | . | 43 | 831 | U-box gene family | AT2G45910 | 46.595 | 0.0 | 727.0 | |
| Vivi12g00732 | . | 541 | 820 | U-box gene family | AT2G23140 | 34.471 | 1.34e-33 | 130.0 | |
| Vivi8g00376 | . | 12 | 668 | U-box gene family | AT5G01830 | 57.078 | 0.0 | 709.0 | |
| Vivi14g00130 | . | 366 | 621 | U-box gene family | AT3G46510 | 24.521 | 1.27e-11 | 65.5 | |
| Vivi14g00099 | . | 14 | 107 | U-box gene family | AT3G07370 | 36.17 | 5.26e-09 | 57.0 | |
| Vivi14g00083 | . | 366 | 621 | U-box gene family | AT3G46510 | 22.222 | 4.32e-06 | 47.8 | |
| Vivi6g01180 | . | 346 | 496 | U-box gene family | AT5G67530 | 46.358 | 9.86e-39 | 154.0 | |
| Vivi3g00393 | . | 1 | 183 | U-box gene family | AT3G19380 | 68.649 | 1.06e-84 | 263.0 | |
| Vivi3g00464 | . | 349 | 494 | U-box gene family | AT5G67530 | 45.57 | 1.03e-34 | 132.0 | |
| Vivi3g00584 | . | 209 | 514 | U-box gene family | AT2G33340 | 23.582 | 2.57e-13 | 69.3 | |
| Vivi14g01295 | . | 476 | 748 | U-box gene family | AT3G54790 | 34.708 | 3.99e-26 | 107.0 | |
| Vivi14g01415 | . | 31 | 535 | U-box gene family | AT5G40140 | 54.617 | 1.35e-173 | 505.0 | |
| Vivi13g00078 | . | 199 | 637 | U-box gene family | AT3G46510 | 45.745 | 3.33e-118 | 360.0 | |
| Vivi13g00047 | . | 353 | 477 | U-box gene family | AT5G67530 | 46.324 | 1.92e-28 | 110.0 | |
| Vivi8g01223 | . | 226 | 519 | U-box gene family | AT2G33340 | 29.766 | 2.61e-33 | 128.0 | |
| Vivi8g00950 | . | 346 | 496 | U-box gene family | AT5G67530 | 48.344 | 5.55e-50 | 167.0 | |
| Vivi8g00742 | . | 236 | 440 | U-box gene family | AT1G04510 | 24.521 | 3.37e-08 | 53.1 | |
| Vivi13g00596 | . | 224 | 447 | U-box gene family | AT1G04510 | 23.894 | 6.59e-12 | 65.9 | |
| Vivi5g00073 | . | 344 | 496 | U-box gene family | AT5G67530 | 31.41 | 1.03e-17 | 79.7 | |
| Vivi5g00109 | . | 582 | 724 | U-box gene family | AT2G23140 | 29.73 | 1.95e-07 | 52.0 | |
| Vivi4g00113 | . | 340 | 501 | U-box gene family | AT5G67530 | 47.273 | 4.81e-41 | 153.0 | |
| Vivi4g00446 | . | 358 | 492 | U-box gene family | AT5G67530 | 42.177 | 2.08e-23 | 101.0 | |
| Vivi4g00514 | . | 532 | 819 | U-box gene family | AT2G23140 | 30.435 | 4.32e-27 | 113.0 | |
| Vivi13g00974 | . | 357 | 494 | U-box gene family | AT5G67530 | 44.595 | 4.38e-29 | 109.0 | |
| Vivi13g00991 | . | 547 | 823 | U-box gene family | AT2G23140 | 36.735 | 4.41e-36 | 135.0 | |
| Vivi6g00816 | . | 8 | 410 | U-box gene family | AT2G35930 | 52.357 | 1.00e-143 | 412.0 | |
| Vivi19g00620 | . | 534 | 779 | U-box gene family | AT2G23140 | 26.721 | 9.03e-14 | 72.0 | |
| Vivi19g00621 | . | 579 | 817 | U-box gene family | AT2G23140 | 29.218 | 1.60e-12 | 68.2 | |
| Vivi3g00696 | . | 201 | 414 | U-box gene family | AT2G33340 | 23.707 | 3.17e-06 | 47.0 | |
| Vivi16g01001 | . | 27 | 807 | U-box gene family | AT1G76390 | 27.409 | 1.30e-60 | 220.0 |