AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01092 ATGTCGACGATAAAAATTGCTCCCGACCTAGGGGTGGAACGCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTTTGCGAAGTGCTTGTGATGATGCTGGGGCTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTTGCCAAGCCTCTTGCTGGAGGCCTACCTATTGGTGCTGTACTGGTTACCGAACAAGTTGCTTCTGCCGTAAACTTCGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTAAAAAAAATCTCAGAACCCAGCTTCTTGGCCAGTGTCGCCAAGAAGGGCCAATACCTGAAACAAATTTTAACCCAGAAGTTGGGACATAA 447 48.55 MSTIKIAPDLGVERIQGEGGIYSATKEFLQFLRSACDDAGALLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTEQVASAVNFGDHGSTFAGSPLVCNAALAVLKKNLRTQLLGQCRQEGPIPETNFNPEVGT* 149
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01092 148 Gene3D - 12 125 IPR015421 -
Vivi19g01092 148 Pfam Aminotransferase class-III 12 133 IPR005814 GO:0008483(InterPro)|GO:0030170(InterPro)
Vivi19g01092 148 SUPERFAMILY PLP-dependent transferases 12 137 IPR015424 -
Vivi19g01092 148 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 43 80 IPR049704 -
Vivi19g01092 148 PANTHER AMINOTRANSFERASE CLASS III 11 135 IPR050103 GO:0009570(PANTHER)|GO:0030170(PANTHER)|GO:0042802(PANTHER)
Vivi19g01092 148 Gene3D Aspartate Aminotransferase, domain 1 126 136 IPR015422 -
Vivi19g01092 148 FunFam Acetylornithine aminotransferase 6 125 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01092 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:22065409 Vivi9g00679 Vivi-Chr9:9871408 dispersed
Vivi Vivi-Chr19:22065409 Vivi19g01095 Vivi-Chr19:22076110 proximal