AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01095 ATGAGCTGCATGCATGTTTTTCCCAACAGTTCAGTTTCTCAAGCAAACACTGTTCATCGGGTGTTCAAGCTAGAGGGAGGACGAACATTAGTTCAGGTCAATGGTCAGAGAGCCGTCTCTGCATGCCTTAATGTGGAGGTTAAAGCGCCAAAGTCTGCAAATTTAGGGAAATTAGGGTTTGGGGAGAGCAAGGATGTCATGGAGATGGAAGGGAGAGTTATTGTGGGAACATATGCAAGAACTCCAATTGTACTTGTGAGCGGAAAAGGATGCAAATTGTATGATGCTGAAGGACGAGAGTATTTGGATATGAGTTCAGGGATTGCAGTGAATTCACTTGGACATGGTGACCCAACTTGGTTGAAAGCCGTCATTGAACAGGCAAACACGCTGACCCACGTCAGCAATATCTACTACTCAATCCCTCAGGTGGAGCTTGCCAAGCGTCTAGTGGCTTGTTCTTTTTCTGATCGTGTGTTTTTCTCAAATTCTGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGGAAGTTTCAGCGGCACTCACATCCGGATGCAAAGGAGCCTCCCACGGATTTCATAGCTTTTACAAATAGCTTCCATGGGAGGACCATGGGTGCTCTTGCTCTGACCAGCAAGGAGCATTATCGATCACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAGTATGGAAATATAGAAGCTACAAAAGAGCTGATTCAGAAAGGCAAAACCGCAGCAGTGTTTGTGGAACCCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTCTGCGAAGTGCTTGTGATGATGCTGGGGTTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTAGCCAAGCCTCTTGCTGGAGGCCTACCTATCGGTGCTGTACTGGTCACCGAACGAGTTGCTTCTGCCATAAACTTTGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTGAAAAAATCTCAGAACCCAGCTTCTTGGCCAGCGTCGCCAAGAAGGGCCAATACCTGAAGCAAATTTTAACCCAGAAGTTGGGACATAACCCACATGTGAAAGAAGTACGTGGGTTTGGGCTCATTGTTGGGATTGAGCTTGACGTCCAGGCCTCGCCGCTGGTGGTTGCCTGTCAAGAAGCTGGCCTTCTGGTGCTCACCTCTGGAAAGGGGAATGTTGTGAGGCTGGTGCCTCCATTGATCATAACAGAAGAGGAGTTGGAGTTGGCAGCTGAGGTTCTTTCCGGGTCTCTTCCAGCACTTGATGGGAGCAATTCAAAGTAG 1404 47.79 MSCMHVFPNSSVSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK* 468
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01095 467 Gene3D Aspartate Aminotransferase, domain 1 82 448 IPR015422 -
Vivi19g01095 467 Pfam Aminotransferase class-III 80 455 IPR005814 GO:0008483(InterPro)|GO:0030170(InterPro)
Vivi19g01095 467 Hamap Acetylornithine-succinyldiaminopimelate aminotransferase [argD]. 73 461 IPR004636 GO:0006525(InterPro)|GO:0008483(InterPro)
Vivi19g01095 467 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 284 321 IPR049704 -
Vivi19g01095 467 NCBIfam acetylornithine-succinylornithine family transaminase 74 455 IPR004636 GO:0006525(InterPro)|GO:0008483(InterPro)
Vivi19g01095 467 SUPERFAMILY PLP-dependent transferases 75 458 IPR015424 -
Vivi19g01095 467 PIRSF Transaminase-4ab-Lys-Orn 28 223 IPR005814 GO:0008483(InterPro)|GO:0030170(InterPro)
Vivi19g01095 467 PIRSF Transaminase-4ab-Lys-Orn 216 461 IPR005814 GO:0008483(InterPro)|GO:0030170(InterPro)
Vivi19g01095 467 Gene3D - 117 366 IPR015421 -
Vivi19g01095 467 FunFam Acetylornithine aminotransferase, mitochondrial 139 366 - -
Vivi19g01095 467 PANTHER AMINOTRANSFERASE CLASS III 62 456 IPR050103 GO:0009570(PANTHER)|GO:0030170(PANTHER)|GO:0042802(PANTHER)
Vivi19g01095 467 CDD OAT-like 67 443 IPR005814 GO:0008483(InterPro)|GO:0030170(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01095 K00818 acetylornithine aminotransferase [EC:2.6.1.11]
Vivi19g01095 K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:6611406 Vivi19g01095 Vivi-Chr19:22076110 dispersed
Vivi Vivi-Chr19:22076110 Vivi9g00679 Vivi-Chr9:9871408 dispersed
Vivi Vivi-Chr19:22065409 Vivi19g01095 Vivi-Chr19:22076110 proximal