Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01095 | ATGAGCTGCATGCATGTTTTTCCCAACAGTTCAGTTTCTCAAGCAAACACTGTTCATCGGGTGTTCAAGCTAGAGGGAGGACGAACATTAGTTCAGGTCAATGGTCAGAGAGCCGTCTCTGCATGCCTTAATGTGGAGGTTAAAGCGCCAAAGTCTGCAAATTTAGGGAAATTAGGGTTTGGGGAGAGCAAGGATGTCATGGAGATGGAAGGGAGAGTTATTGTGGGAACATATGCAAGAACTCCAATTGTACTTGTGAGCGGAAAAGGATGCAAATTGTATGATGCTGAAGGACGAGAGTATTTGGATATGAGTTCAGGGATTGCAGTGAATTCACTTGGACATGGTGACCCAACTTGGTTGAAAGCCGTCATTGAACAGGCAAACACGCTGACCCACGTCAGCAATATCTACTACTCAATCCCTCAGGTGGAGCTTGCCAAGCGTCTAGTGGCTTGTTCTTTTTCTGATCGTGTGTTTTTCTCAAATTCTGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGGAAGTTTCAGCGGCACTCACATCCGGATGCAAAGGAGCCTCCCACGGATTTCATAGCTTTTACAAATAGCTTCCATGGGAGGACCATGGGTGCTCTTGCTCTGACCAGCAAGGAGCATTATCGATCACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAGTATGGAAATATAGAAGCTACAAAAGAGCTGATTCAGAAAGGCAAAACCGCAGCAGTGTTTGTGGAACCCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTCTGCGAAGTGCTTGTGATGATGCTGGGGTTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTAGCCAAGCCTCTTGCTGGAGGCCTACCTATCGGTGCTGTACTGGTCACCGAACGAGTTGCTTCTGCCATAAACTTTGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTGAAAAAATCTCAGAACCCAGCTTCTTGGCCAGCGTCGCCAAGAAGGGCCAATACCTGAAGCAAATTTTAACCCAGAAGTTGGGACATAACCCACATGTGAAAGAAGTACGTGGGTTTGGGCTCATTGTTGGGATTGAGCTTGACGTCCAGGCCTCGCCGCTGGTGGTTGCCTGTCAAGAAGCTGGCCTTCTGGTGCTCACCTCTGGAAAGGGGAATGTTGTGAGGCTGGTGCCTCCATTGATCATAACAGAAGAGGAGTTGGAGTTGGCAGCTGAGGTTCTTTCCGGGTCTCTTCCAGCACTTGATGGGAGCAATTCAAAGTAG | 1404 | 47.79 | MSCMHVFPNSSVSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK* | 468 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01095 | 467 | Gene3D | Aspartate Aminotransferase, domain 1 | 82 | 448 | IPR015422 | - | |
| Vivi19g01095 | 467 | Pfam | Aminotransferase class-III | 80 | 455 | IPR005814 | GO:0008483(InterPro)|GO:0030170(InterPro) | |
| Vivi19g01095 | 467 | Hamap | Acetylornithine-succinyldiaminopimelate aminotransferase [argD]. | 73 | 461 | IPR004636 | GO:0006525(InterPro)|GO:0008483(InterPro) | |
| Vivi19g01095 | 467 | ProSitePatterns | Aminotransferases class-III pyridoxal-phosphate attachment site. | 284 | 321 | IPR049704 | - | |
| Vivi19g01095 | 467 | NCBIfam | acetylornithine-succinylornithine family transaminase | 74 | 455 | IPR004636 | GO:0006525(InterPro)|GO:0008483(InterPro) | |
| Vivi19g01095 | 467 | SUPERFAMILY | PLP-dependent transferases | 75 | 458 | IPR015424 | - | |
| Vivi19g01095 | 467 | PIRSF | Transaminase-4ab-Lys-Orn | 28 | 223 | IPR005814 | GO:0008483(InterPro)|GO:0030170(InterPro) | |
| Vivi19g01095 | 467 | PIRSF | Transaminase-4ab-Lys-Orn | 216 | 461 | IPR005814 | GO:0008483(InterPro)|GO:0030170(InterPro) | |
| Vivi19g01095 | 467 | Gene3D | - | 117 | 366 | IPR015421 | - | |
| Vivi19g01095 | 467 | FunFam | Acetylornithine aminotransferase, mitochondrial | 139 | 366 | - | - | |
| Vivi19g01095 | 467 | PANTHER | AMINOTRANSFERASE CLASS III | 62 | 456 | IPR050103 | GO:0009570(PANTHER)|GO:0030170(PANTHER)|GO:0042802(PANTHER) | |
| Vivi19g01095 | 467 | CDD | OAT-like | 67 | 443 | IPR005814 | GO:0008483(InterPro)|GO:0030170(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01095 | K00818 | acetylornithine aminotransferase [EC:2.6.1.11] | ||||
| Vivi19g01095 | K00821 | acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr10:6611406 | Vivi19g01095 | Vivi-Chr19:22076110 | dispersed | |
| Vivi | Vivi-Chr19:22076110 | Vivi9g00679 | Vivi-Chr9:9871408 | dispersed | |
| Vivi | Vivi-Chr19:22065409 | Vivi19g01095 | Vivi-Chr19:22076110 | proximal |