AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01099 | ATGGCAAACAATGAGCTAAGGATCCCACTGGCACGAACCACTGGATCATCAAGTTTCATTAATGCTTGCTTCAATGGCATAAATACATTCCTTGGAATGAGTTATCTAACAGTCCCTTATGCCCTCTCAACTGGAGGTTGGTTGAGTTTGATGCTGTTTTCCTTAGTTGCAATTATGACCTTTTACACTGGAATTTTACTAAAACGATGCATGGAAGCCGCTGATCATCCGTCTATTACTAGCTACCTTGATATTGCAGGGCATGCATTTGGTACAAAAGGAAGAATCACAGTCATGATCATTATGAATTTGGAAATATATCTTGTTGCTGTCGGGCTTTTGATACAGGAGGTTGACAGCTTGCGTAAGCTATTTCCAGAATTCATGATCAACCTTGGGGAATTAACAGTAGATGGAAGACAGTCATTTGCTATAATCACATTCCTAATAATCTTGCCAACAATATTTTTAACCGACTTGAGCATTCTCTCCTATATCTCTGCCACTGGATTTTATTCATGCCTTGTCATCCTTGTCTCCATTTTTTGTGTCGGTGCATTCAATGGTGTTGGCTTTCATGCGAAGGGATCGATACTGTTAAATGTGGACCGCCTACCTATTACAGTTAGCTTGTATATTGTTTCCTTTGGTGGACATCCAGTCATCCCTCCAATATATGTATCAATGCGAGACCGCTACCAGTTCAGTAAGGTCTTACTATTCAGTTTTGTTCTTGCAACACTCACCTACATGTCAATGGCCATAGTAGGATATCTAATGTATGGAGACAGGGTTGAATCAGAAATAACTTTGAATCTACCAACAAGTAAAGTTAGTGCAAGAATCACAATTTATACGACTTTAGTTATTCCAATCGCCAGATATGCATTGGTATTAACCCCAATTGCAACTGCCATTGAAGGCGGGATTTCAGAAAATTACAAGAATAAGAGAGCTGTTAGATTATTTATAAGAGTAGCATTGCTGTTTAGCACAGCTATTGTGGCATATTATTTTCCCTATTACGAGTCCCTGATGGCAATTGTTGGATCAATTTTTGTCGTTTCGGGTTCTTTTCTGCTCCCATGCTTGTGTTACTTGAAGATTTCTGATCTCAATTGGGGTTGGAACTGTGAGCAGATAGGCATTGGGGGGATAATTCTATTTGGAACATTTGCTGGGGTTTTAGGGACTTATTCATCTATTTCTGAACTTGTAAGATAA | 1224 | 39.13 | MANNELRIPLARTTGSSSFINACFNGINTFLGMSYLTVPYALSTGGWLSLMLFSLVAIMTFYTGILLKRCMEAADHPSITSYLDIAGHAFGTKGRITVMIIMNLEIYLVAVGLLIQEVDSLRKLFPEFMINLGELTVDGRQSFAIITFLIILPTIFLTDLSILSYISATGFYSCLVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSLYIVSFGGHPVIPPIYVSMRDRYQFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITLNLPTSKVSARITIYTTLVIPIARYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFSTAIVAYYFPYYESLMAIVGSIFVVSGSFLLPCLCYLKISDLNWGWNCEQIGIGGIILFGTFAGVLGTYSSISELVR* | 408 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01099 | 407 | Pfam | Transmembrane amino acid transporter protein | 16 | 402 | IPR013057 | - | |
| Vivi19g01099 | 407 | PANTHER | OS05G0424000 PROTEIN-RELATED | 19 | 396 | - | GO:0003333(PANTHER)|GO:0015171(PANTHER)|GO:0016020(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01099 | K15015 | solute carrier family 32 (vesicular inhibitory amino acid transporter) |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr19:22143585 | Vivi19g01101 | Vivi-Chr19:22157769 | dispersed | |
| Vivi | Vivi-Chr19:22135684 | Vivi19g01099 | Vivi-Chr19:22143585 | tandem | |
| Vivi | Vivi-Chr19:22143585 | Vivi19g01100 | Vivi-Chr19:22155045 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi18g00604 | . | 62 | 455 | Amino Acid/Auxin Permease AAAP family | AT3G30390 | 62.944 | 0.0 | 518.0 | |
| Vivi14g01529 | . | 256 | 318 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 55.556 | 2.87e-17 | 76.3 | |
| Vivi14g01530 | . | 1 | 405 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 57.971 | 1.66e-174 | 492.0 | |
| Vivi14g01531 | . | 1 | 405 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 60.741 | 0.0 | 517.0 | |
| Vivi14g01535 | . | 1 | 405 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 48.434 | 4.14e-130 | 377.0 | |
| Vivi14g01536 | . | 1 | 405 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 61.235 | 0.0 | 521.0 | |
| Vivi13g00543 | . | 1 | 549 | Amino Acid/Auxin Permease AAAP family | AT2G39130 | 70.723 | 0.0 | 799.0 | |
| Vivi9g00658 | . | 1 | 413 | Amino Acid/Auxin Permease AAAP family | AT1G80510 | 69.856 | 0.0 | 543.0 | |
| Vivi1g00918 | . | 1 | 402 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 52.488 | 5.24e-150 | 429.0 | |
| Vivi19g01101 | . | 60 | 401 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 46.356 | 1.42e-110 | 328.0 | |
| Vivi19g01100 | . | 31 | 419 | Amino Acid/Auxin Permease AAAP family | AT5G15240 | 48.082 | 1.75e-119 | 352.0 | |
| Vivi19g01099 | . | 31 | 419 | Amino Acid/Auxin Permease AAAP family | AT5G15240 | 46.803 | 5.51e-116 | 343.0 | |
| Vivi19g01098 | . | 31 | 406 | Amino Acid/Auxin Permease AAAP family | AT5G15240 | 46.809 | 2.11e-115 | 343.0 | |
| Vivi6g01090 | . | 9 | 236 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 62.025 | 2.56e-101 | 299.0 | |
| Vivi5g01092 | . | 1 | 424 | Amino Acid/Auxin Permease AAAP family | AT5G16740 | 62.014 | 0.0 | 511.0 | |
| Vivi13g00124 | . | 9 | 435 | Amino Acid/Auxin Permease AAAP family | AT3G56200 | 63.488 | 0.0 | 525.0 | |
| Vivi8g01162 | . | 63 | 422 | Amino Acid/Auxin Permease AAAP family | AT2G41190 | 66.488 | 4.08e-180 | 512.0 | |
| Vivi8g01161 | . | 426 | 535 | Amino Acid/Auxin Permease AAAP family | AT2G41190 | 67.273 | 7.84e-48 | 158.0 | |
| Vivi9g00768 | . | 330 | 422 | Amino Acid/Auxin Permease AAAP family | AT5G15240 | 38.71 | 4.98e-17 | 72.8 | |
| Vivi14g00966 | . | 120 | 461 | Amino Acid/Auxin Permease AAAP family | AT3G30390 | 75.731 | 0.0 | 542.0 | |
| Vivi6g00861 | . | 2 | 402 | Amino Acid/Auxin Permease AAAP family | AT3G28960 | 58.105 | 3.40e-176 | 496.0 |