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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01112 ATGGGGAGAGGCAGAGCCCCTTGTTGTGATAAGAGTAAGGTGAAGAGAGGGCCATGGAGCCCTGCTGAGGACATGAGGCTTGTGTCTTTTATTCAGAAGAATGGTCATGAGAATTGGAGGTCTCTGCCTAAACAAGCAGGACTGTTGCGATGCGGGAAAAGTTGTCGATTGCGATGGATTAATTACCTAAGGCCTGACGTTAAGCGCGGAAACTTCAGTAAGGAGGAAGAGGATGCCATAATCAAGCTCCATCAGACCTTGGGCAACAAGTGGTCAAAGATTGCGTCGCATTTTCCAGGCAGGACGGATAATGAGATCAAGAATGTATGGAACACTCATTTGAAGAAACGTCTGGTGGCTCAAAAGAATGATAAACTCTATTCATCTTCATCAAATACTAATCCAATTAGCAATAGTCCTAACCCTAGCCCTAGTACTAACAATGAGCCCAAGGAGCCATCAAGCTCTTCTACTAACTCATCACCAAACATTGAAACACAAGTGGACTCGATAATTTTCGACTTTGTAGGAACTTATGGCATGCTAGACGAGGTGAACAAGCCGGGCGAAGAACTGGAAATCCCATTGGAGACCGACACCAGTTTTTGGGAGATGTTGGACAGCCTAGGCTCATTCCAGTACAACAATGAAGTAGAGGGAAGCCAGAGCTCTATCATTATTGCAGACCATGAACAAGGAAATGATAATGGAGATGCAGCCCATGAGAGCAGGAGTTGGCTGAGGTACATAGAGAATGAACTTGGACTAGAGGAAACAAGTGATGAAACCATGGAAACATGTACTAAAATTCAGCTTAATGGAGATGAGCAGCCAGCCAGTGAGATCATTAGTTTCCTAGAGGATGACGGTGGGAAGCTAGAAGACAATCCAAGTATTATAATTTTAATTTCTTCTAATCTATGGTATGATGATGACCCCTTTGTATATTTGAAAATTAATCTCTTGAATTTTATGAAGTTGGAGAGTGGGTTGGTGAAATTCTCCACTTACCATCATAGAACCATACAATTTTGTGACACCCAATTTCTAAGTGTCCCCACACTTGGAAAGAATGAGAGGATAAAAGTATATTGA 1095 42.56 MGRGRAPCCDKSKVKRGPWSPAEDMRLVSFIQKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSKEEEDAIIKLHQTLGNKWSKIASHFPGRTDNEIKNVWNTHLKKRLVAQKNDKLYSSSSNTNPISNSPNPSPSTNNEPKEPSSSSTNSSPNIETQVDSIIFDFVGTYGMLDEVNKPGEELEIPLETDTSFWEMLDSLGSFQYNNEVEGSQSSIIIADHEQGNDNGDAAHESRSWLRYIENELGLEETSDETMETCTKIQLNGDEQPASEIISFLEDDGGKLEDNPSIIILISSNLWYDDDPFVYLKINLLNFMKLESGLVKFSTYHHRTIQFCDTQFLSVPTLGKNERIKVY* 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01112 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vivi19g01112 364 SMART sant 15 65 IPR001005 -
Vivi19g01112 364 SMART sant 68 116 IPR001005 -
Vivi19g01112 364 Gene3D - 71 139 - -
Vivi19g01112 364 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 221 - -
Vivi19g01112 364 FunFam MYB transcription factor 70 143 - -
Vivi19g01112 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vivi19g01112 364 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vivi19g01112 364 CDD SANT 71 114 IPR001005 -
Vivi19g01112 364 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vivi19g01112 364 CDD SANT 18 63 IPR001005 -
Vivi19g01112 364 Gene3D - 16 68 - -
Vivi19g01112 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vivi19g01112 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vivi19g01112 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vivi19g01112 364 MobiDBLite consensus disorder prediction 124 164 - -
Vivi19g01112 364 FunFam Transcription factor RAX3 9 69 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01112 K09422 transcription factor MYB, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:22358835 Vivi5g00709 Vivi-Chr5:8046845 dispersed
Vivi Vivi-Chr19:22358835 Vivi5g00708 Vivi-Chr5:8035771 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g01316 . 1 207 MYB Transcription Factor family AT4G38620 65.217 1.55e-93 275.0
Vivi12g00598 . 1 250 MYB Transcription Factor family AT3G23250 45.6 8.97e-67 207.0
Vivi12g00599 . 1 230 MYB Transcription Factor family AT3G23250 47.034 6.41e-63 197.0
Vivi12g00607 . 1 349 MYB Transcription Factor family AT4G21440 47.938 3.79e-107 315.0
Vivi3g00624 . 2 277 MYB Transcription Factor family AT5G67300 34.173 6.09e-24 97.1
Vivi14g01236 . 1 168 MYB Transcription Factor family AT5G14340 67.262 4.61e-81 248.0
Vivi17g00807 . 1 134 MYB Transcription Factor family AT5G26660 82.836 1.11e-80 241.0
Vivi17g00760 . 71 415 MYB Transcription Factor family AT4G18770 46.045 3.31e-90 278.0
Vivi17g00753 . 11 203 MYB Transcription Factor family AT5G14750 54.673 1.81e-76 227.0
Vivi17g00572 . 1 324 MYB Transcription Factor family AT5G15310 54.412 6.74e-111 323.0
Vivi17g00551 . 1 277 MYB Transcription Factor family AT1G08810 54.643 1.00e-96 283.0
Vivi17g00475 . 1 314 MYB Transcription Factor family AT3G28470 44.675 2.13e-77 237.0
Vivi17g00312 . 1 276 MYB Transcription Factor family AT1G25340 44.688 4.63e-85 256.0
Vivi17g00236 . 28 692 MYB Transcription Factor family AT3G18100 49.19 0.0 598.0
Vivi17g00231 . 7 127 MYB Transcription Factor family AT4G09460 76.033 2.48e-72 217.0
Vivi17g00230 . 3 166 MYB Transcription Factor family AT4G09460 62.195 3.41e-74 220.0
Vivi17g00160 . 2 244 MYB Transcription Factor family AT1G17950 55.466 6.67e-86 253.0
Vivi18g00408 . 1 362 MYB Transcription Factor family AT1G34670 55.435 5.91e-114 332.0
Vivi18g00595 . 1 303 MYB Transcription Factor family AT3G49690 49.226 1.50e-86 261.0
Vivi18g00713 . 5 320 MYB Transcription Factor family AT4G37260 45.566 7.42e-86 257.0
Vivi18g00821 . 1 111 MYB Transcription Factor family AT2G23290 71.171 5.57e-51 174.0
Vivi18g01194 . 3 112 MYB Transcription Factor family AT1G17950 82.727 7.55e-67 208.0
Vivi1g00982 . 12 139 MYB Transcription Factor family AT3G12720 84.375 1.06e-79 244.0
Vivi14g01545 . 1 323 MYB Transcription Factor family AT3G28910 54.857 1.09e-114 332.0
Vivi14g01563 . 105 219 MYB Transcription Factor family AT1G69560 90.435 8.96e-75 235.0
Vivi14g01571 . 1 326 MYB Transcription Factor family AT5G15310 55.224 4.15e-109 317.0
Vivi1g00411 . 3 223 MYB Transcription Factor family AT4G38620 52.889 1.83e-77 233.0
Vivi1g00327 . 18 282 MYB Transcription Factor family AT1G68320 52.518 1.51e-87 261.0
Vivi1g00103 . 5 143 MYB Transcription Factor family AT1G66370 52.518 7.76e-49 158.0
Vivi1g00102 . 4 127 MYB Transcription Factor family AT1G66370 62.903 8.95e-53 168.0
Vivi10g00018 . 69 115 MYB Transcription Factor family AT3G27920 53.191 1.41e-13 60.8
Vivi10g00087 . 81 121 MYB Transcription Factor family AT3G13540 60.976 9.11e-14 62.4
Vivi18g01493 . 1 179 MYB Transcription Factor family AT4G38620 63.333 1.12e-78 236.0
Vivi18g01492 . 1 117 MYB Transcription Factor family AT4G38620 83.761 2.73e-72 218.0
Vivi2g00693 . 1 326 MYB Transcription Factor family AT5G16770 47.72 1.01e-90 271.0
Vivi1g00706 . 11 201 MYB Transcription Factor family AT5G14750 50.962 4.60e-65 198.0
Vivi16g00332 . 1 188 MYB Transcription Factor family AT4G21440 46.766 3.36e-46 158.0
Vivi19g00313 . 1 349 MYB Transcription Factor family AT4G21440 50.847 7.45e-111 325.0
Vivi19g00739 . 1 171 MYB Transcription Factor family AT5G56110 92.398 1.13e-118 343.0
Vivi11g00095 . 1 133 MYB Transcription Factor family AT2G16720 66.176 5.76e-63 194.0
Vivi11g00096 . 11 179 MYB Transcription Factor family AT5G35550 57.143 3.93e-61 189.0
Vivi11g00097 . 1 226 MYB Transcription Factor family AT5G35550 49.576 4.76e-65 201.0
Vivi11g00237 . 1 120 MYB Transcription Factor family AT5G57620 77.5 6.48e-70 218.0
Vivi11g00325 . 19 202 MYB Transcription Factor family AT4G32730 84.239 6.04e-108 350.0
Vivi11g00501 . 81 201 MYB Transcription Factor family AT5G52600 41.727 3.53e-22 85.9
Vivi11g00502 . 9 201 MYB Transcription Factor family AT5G52600 55.66 1.38e-67 204.0
Vivi11g00505 . 9 201 MYB Transcription Factor family AT5G52600 51.429 4.00e-63 198.0
Vivi13g00419 . 53 390 MYB Transcription Factor family AT3G55730 47.578 8.35e-102 305.0
Vivi9g00101 . 15 186 MYB Transcription Factor family AT5G14750 48.837 1.28e-54 171.0
Vivi9g00103 . 11 220 MYB Transcription Factor family AT5G35550 49.138 6.05e-64 201.0
Vivi9g00104 . 14 154 MYB Transcription Factor family AT5G35550 60.993 4.25e-56 180.0
Vivi9g00129 . 1 127 MYB Transcription Factor family AT3G13890 88.976 7.99e-77 238.0
Vivi5g00285 . 1 188 MYB Transcription Factor family AT1G09540 64.894 3.31e-83 254.0
Vivi15g00347 . 1 297 MYB Transcription Factor family AT3G60460 51.385 3.24e-92 274.0
Vivi16g00458 . 1 271 MYB Transcription Factor family AT4G12350 54.613 6.53e-95 279.0
Vivi4g01141 . 1 282 MYB Transcription Factor family AT4G38620 57.045 1.92e-101 294.0
Vivi2g00036 . 1 358 MYB Transcription Factor family AT1G63910 50.552 1.32e-102 303.0
Vivi2g00206 . 1 47 MYB Transcription Factor family AT4G28110 59.574 4.35e-14 63.9
Vivi2g00384 . 63 233 MYB Transcription Factor family AT5G02320 69.767 8.52e-83 268.0
Vivi1g00940 . 1 321 MYB Transcription Factor family AT5G15310 45.845 2.70e-89 269.0
Vivi1g00925 . 75 224 MYB Transcription Factor family AT1G69560 75.333 3.75e-77 238.0
Vivi1g00878 . 19 436 MYB Transcription Factor family AT1G14350 57.783 0.0 523.0
Vivi2g00824 . 7 154 MYB Transcription Factor family AT1G66370 58.784 1.46e-52 167.0
Vivi2g00825 . 7 227 MYB Transcription Factor family AT1G66370 50.0 5.94e-63 195.0
Vivi2g00826 . 7 225 MYB Transcription Factor family AT1G66370 47.619 9.80e-60 187.0
Vivi2g00827 . 7 227 MYB Transcription Factor family AT1G66370 48.649 1.23e-62 194.0
Vivi2g00828 . 7 225 MYB Transcription Factor family AT1G66370 47.598 2.62e-58 182.0
Vivi2g00829 . 7 211 MYB Transcription Factor family AT1G66370 27.317 2.52e-12 61.2
Vivi2g00830 . 7 111 MYB Transcription Factor family AT1G66370 80.952 4.89e-59 182.0
Vivi2g00831 . 31 225 MYB Transcription Factor family AT1G66370 44.231 6.74e-42 140.0
Vivi14g00605 . 513 826 MYB Transcription Factor family AT1G09770 61.199 1.12e-126 380.0
Vivi14g00604 . 1 315 MYB Transcription Factor family AT1G09770 85.397 0.0 528.0
Vivi14g00601 . 1 117 MYB Transcription Factor family AT3G23250 66.434 1.36e-65 202.0
Vivi3g00151 . 1 282 MYB Transcription Factor family AT4G38620 58.511 6.89e-101 292.0
Vivi16g00101 . 1 325 MYB Transcription Factor family AT5G16770 51.818 1.29e-100 295.0
Vivi16g00102 . 11 128 MYB Transcription Factor family AT5G10280 63.025 8.64e-46 166.0
Vivi16g00103 . 37 188 MYB Transcription Factor family AT4G32730 41.83 2.12e-30 118.0
Vivi16g00119 . 13 115 MYB Transcription Factor family AT1G34670 50.962 7.18e-26 103.0
Vivi6g00597 . 16 412 MYB Transcription Factor family AT5G11050 37.358 4.42e-74 237.0
Vivi6g00391 . 1 248 MYB Transcription Factor family AT3G46130 57.2 2.72e-90 265.0
Vivi6g00202 . 3 343 MYB Transcription Factor family AT3G08500 46.328 1.59e-81 249.0
Vivi6g00055 . 2 214 MYB Transcription Factor family AT3G13540 61.991 6.05e-88 261.0
Vivi4g01307 . 3 109 MYB Transcription Factor family AT1G17950 86.916 8.47e-67 209.0
Vivi15g00915 . 1 290 MYB Transcription Factor family AT3G61250 64.865 1.08e-130 372.0
Vivi15g00746 . 73 112 MYB Transcription Factor family AT5G14750 57.5 3.60e-13 60.1
Vivi15g00662 . 1 122 MYB Transcription Factor family AT5G49330 76.23 3.17e-67 209.0
Vivi15g00573 . 25 189 MYB Transcription Factor family AT4G32730 70.909 1.90e-78 261.0
Vivi5g00708 . 1 117 MYB Transcription Factor family AT3G23250 82.051 1.04e-73 220.0
Vivi5g00709 . 1 281 MYB Transcription Factor family AT3G23250 52.669 6.85e-91 268.0
Vivi5g00803 . 14 268 MYB Transcription Factor family AT3G24310 59.302 5.80e-92 270.0
Vivi7g00370 . 1 371 MYB Transcription Factor family AT2G47460 43.032 6.39e-85 260.0
Vivi7g00435 . 24 298 MYB Transcription Factor family AT5G49620 53.846 4.94e-85 254.0
Vivi7g00487 . 1 150 MYB Transcription Factor family AT1G09540 83.333 1.48e-91 270.0
Vivi7g00557 . 1 246 MYB Transcription Factor family AT2G31180 50.943 9.37e-88 258.0
Vivi16g00869 . 69 108 MYB Transcription Factor family AT5G52600 57.5 1.70e-12 58.2
Vivi16g00660 . 1 278 MYB Transcription Factor family AT3G61250 48.208 4.67e-89 265.0
Vivi16g00658 . 1 194 MYB Transcription Factor family AT4G25560 49.495 1.16e-59 190.0
Vivi11g01052 . 1 201 MYB Transcription Factor family AT5G57620 75.0 1.56e-102 304.0
Vivi8g00061 . 1 267 MYB Transcription Factor family AT1G08810 60.517 1.01e-106 309.0
Vivi8g00088 . 107 223 MYB Transcription Factor family AT1G69560 82.051 1.04e-65 212.0
Vivi12g00381 . 3 138 MYB Transcription Factor family AT2G32460 74.126 4.75e-75 241.0
Vivi12g00525 . 72 112 MYB Transcription Factor family AT5G35550 63.415 1.91e-13 60.8
Vivi14g00706 . 1 274 MYB Transcription Factor family AT1G66230 59.273 2.27e-99 290.0
Vivi14g00754 . 3 209 MYB Transcription Factor family AT1G66370 52.174 5.69e-66 203.0
Vivi14g00755 . 3 147 MYB Transcription Factor family AT1G66370 66.897 1.10e-68 210.0
Vivi14g00756 . 3 147 MYB Transcription Factor family AT1G66370 57.241 1.81e-53 171.0
Vivi14g00778 . 3 223 MYB Transcription Factor family AT4G38620 54.867 7.93e-78 234.0
Vivi14g00018 . 1 217 MYB Transcription Factor family AT1G09540 65.022 2.95e-97 292.0
Vivi6g01080 . 1 119 MYB Transcription Factor family AT5G57620 84.874 7.58e-75 231.0
Vivi5g01050 . 119 210 MYB Transcription Factor family AT5G67300 48.936 1.57e-09 55.5
Vivi13g01154 . 44 342 MYB Transcription Factor family AT3G08500 47.231 2.02e-70 219.0
Vivi14g01342 . 14 214 MYB Transcription Factor family AT5G40350 64.179 2.19e-84 246.0
Vivi14g01355 . 14 201 MYB Transcription Factor family AT5G14750 57.416 3.89e-75 224.0
Vivi14g01439 . 1 317 MYB Transcription Factor family AT3G28470 48.466 2.88e-91 275.0
Vivi8g01330 . 7 150 MYB Transcription Factor family AT3G13540 78.082 5.62e-83 246.0
Vivi8g01144 . 1 119 MYB Transcription Factor family AT5G57620 86.555 1.73e-75 234.0
Vivi8g01126 . 7 121 MYB Transcription Factor family AT3G53200 72.174 1.05e-54 169.0
Vivi8g00829 . 45 393 MYB Transcription Factor family AT3G09230 50.0 8.43e-110 326.0
Vivi8g00734 . 1 185 MYB Transcription Factor family AT2G37630 76.757 4.27e-94 282.0
Vivi8g00731 . 18 298 MYB Transcription Factor family AT3G09370 66.438 7.83e-136 393.0
Vivi5g00028 . 1 309 MYB Transcription Factor family AT3G06490 56.481 2.76e-97 288.0
Vivi5g00104 . 1 123 MYB Transcription Factor family AT5G49330 82.114 2.04e-70 222.0
Vivi11g00789 . 1 358 MYB Transcription Factor family AT1G34670 53.425 2.29e-109 321.0
Vivi4g00044 . 1 117 MYB Transcription Factor family AT5G65790 79.487 1.06e-70 220.0
Vivi4g00152 . 1 145 MYB Transcription Factor family AT4G38620 66.897 1.70e-64 201.0
Vivi4g00153 . 1 195 MYB Transcription Factor family AT1G22640 49.02 4.49e-62 196.0
Vivi4g00154 . 1 255 MYB Transcription Factor family AT5G35550 48.327 1.82e-65 203.0
Vivi4g00155 . 1 145 MYB Transcription Factor family AT4G34990 53.793 1.17e-49 163.0
Vivi4g00156 . 18 200 MYB Transcription Factor family AT5G14750 48.663 1.78e-52 166.0
Vivi4g00159 . 15 165 MYB Transcription Factor family AT5G14750 55.629 7.53e-55 171.0
Vivi4g00326 . 3 205 MYB Transcription Factor family AT4G32730 79.31 2.83e-110 354.0
Vivi4g00327 . 25 670 MYB Transcription Factor family AT4G32730 42.285 5.73e-146 445.0
Vivi14g00917 . 1 358 MYB Transcription Factor family AT2G37630 46.056 1.05e-103 309.0
Vivi14g00997 . 26 236 MYB Transcription Factor family AT3G30210 55.507 1.87e-76 231.0
Vivi13g00966 . 1 119 MYB Transcription Factor family AT2G16720 68.067 4.29e-60 189.0
Vivi19g01175 . 12 144 MYB Transcription Factor family AT3G12720 87.218 1.94e-86 261.0
Vivi19g01112 . 1 269 MYB Transcription Factor family AT1G16490 50.508 1.91e-90 271.0
Vivi6g00954 . 29 521 MYB Transcription Factor family AT3G11440 37.044 1.34e-86 275.0
Vivi19g00526 . 15 136 MYB Transcription Factor family AT2G32460 81.967 1.49e-71 231.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi Myb_DNA-binding 4.3e-12 CL0123 TF MYB