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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01124 ATGGCAGCAGCCCTTTTCGCCAGAACCCTTTTTGGAAATCGCTTGATTCGTTCCTCACTTGCCCTCTATCAGAAGCCTCAAATCTTCACCTCTTTTTTCAATAAGAGACCATTTTACTCACGGCCCAACGCTGTCTATTTGGTGTATAGAAGTTCTGGTTTTTCCACTTGTGCTATGGCTTCTTCAACTTCTGGGACAAGGTCTTCTTTTTCAACACAGTCTGTGTCTCCAAATGAACCTGTTGTTTCCGTTGATTGGCTCCATGCCAACATTAGGGAACCTGACTTGAAGGTGTTGGATGCGTCCTGGTACATGCCAGATGAGCAGAGAAATCCACTTCAGGAGTATCAGGTTGCCCACATTCCAGGTGCCCTTTTCTTTGATGTGGATGGCATATCAGATCAAACCACAAATTTGCCACACATGTTGCCATCGGAGGAAGCTTTTGCCGCTGCTGTTTCTGCCCTTGGTATTGAAAATAAAGATGGAGTTGTTGTTTATGACGGAAAGGGAATTTTCAGTGCAGCTCGGGTTTGGTGGATGTTCCGGGTATTTGGGCATGAGAGAATCTGGGTGTTGGATGGGGGCCTGCCAACATGGCGTGCATCAGGATTTGATGTAGAATCTAGTGCTTCTGGTGATGCTATTTTAAAAGCTAGTGCTGCCAGTGAGGCCATAGAGAAAGTATATCGCAGACAGGCAGTCGGGCCAATCACATTTCAGACAAGATTCCAGCCACATCTTGTCTGGACTCTTGAACAGGTTAATCAAAACATTGAGAACAAAACACACCAACACATAGATGCCAGATCAAAGGCCAGGTTTGATGGGATTGCACCAGAGCCTCGAAAGGGAATAAGAAGTGGACATGTCCCCAGCAGCAAGTGCATTCCCTTTTCCCAGATGTTGGATTCTTCACAAAAACTCTTACCTGCAGATGAGCTTAAGAAACGATTTGATCAAGAAGGCATCTCTTTGGACAGCCCCGTTGTGACTTCTTGTGGCACTGGTGTAACTGCTTGTATTCTCGCATTGGGTCTGCATCGTCTTGGGAAATCTGATGTTACTGTCTATGATGGCTCATGGACTGAATGGGGAGCTCACCCTGACACACCCGTCGCAACTTCTTCAGCTTCATCTTAA 1143 46.19 MAAALFARTLFGNRLIRSSLALYQKPQIFTSFFNKRPFYSRPNAVYLVYRSSGFSTCAMASSTSGTRSSFSTQSVSPNEPVVSVDWLHANIREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDQTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHERIWVLDGGLPTWRASGFDVESSASGDAILKASAASEAIEKVYRRQAVGPITFQTRFQPHLVWTLEQVNQNIENKTHQHIDARSKARFDGIAPEPRKGIRSGHVPSSKCIPFSQMLDSSQKLLPADELKKRFDQEGISLDSPVVTSCGTGVTACILALGLHRLGKSDVTVYDGSWTEWGAHPDTPVATSSASS* 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01124 380 FunFam Sulfurtransferase 74 216 - -
Vivi19g01124 380 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Vivi19g01124 380 CDD TST-Repeat-1 81 204 - -
Vivi19g01124 380 Gene3D - 74 215 IPR036873 -
Vivi19g01124 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 79 210 IPR036873 -
Vivi19g01124 380 FunFam Sulfurtransferase 245 376 - -
Vivi19g01124 380 SMART rhod-4 82 206 IPR001763 -
Vivi19g01124 380 SMART rhod-4 250 371 IPR001763 -
Vivi19g01124 380 Coils Coil 252 272 - -
Vivi19g01124 380 Pfam Rhodanese-like domain 251 367 IPR001763 -
Vivi19g01124 380 Pfam Rhodanese-like domain 83 202 IPR001763 -
Vivi19g01124 380 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792(InterPro)
Vivi19g01124 380 PANTHER THIOSULFATE SULFERTANSFERASE 76 377 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Vivi19g01124 380 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Vivi19g01124 380 Gene3D - 245 378 IPR036873 -
Vivi19g01124 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 253 376 IPR036873 -
Vivi19g01124 380 CDD TST-Repeat-2 251 367 - -
Vivi19g01124 380 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01124 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi17g00860 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 66.441 3.26e-142 400.0
Vivi17g00574 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 32.258 1.85e-07 47.8
Vivi17g00389 . 29 386 Sulfurtransferasese/Rhodanese gene family AT5G23060 68.975 9.97e-177 516.0
Vivi17g00108 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 26.484 1.05e-11 64.7
Vivi18g00475 . 345 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.778 2.55e-19 84.3
Vivi8g00246 . 13 213 Sulfurtransferasese/Rhodanese gene family AT3G08920 59.624 5.32e-87 254.0
Vivi9g00876 . 81 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 30.657 4.17e-12 66.2
Vivi4g01130 . 28 151 Sulfurtransferasese/Rhodanese gene family AT2G17850 54.839 5.02e-48 149.0
Vivi4g01129 . 28 122 Sulfurtransferasese/Rhodanese gene family AT2G17850 41.129 2.88e-27 97.8
Vivi4g01128 . 33 147 Sulfurtransferasese/Rhodanese gene family AT2G17850 50.435 1.68e-37 123.0
Vivi8g00445 . 354 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 27.854 6.44e-11 60.5
Vivi15g00742 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 51.096 1.47e-131 383.0
Vivi17g00978 . 4 109 Sulfurtransferasese/Rhodanese gene family AT1G17850 35.514 1.00e-09 53.1
Vivi17g00979 . 108 442 Sulfurtransferasese/Rhodanese gene family AT1G17850 68.657 3.80e-175 493.0
Vivi14g00082 . 18 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 66.721 0.0 818.0
Vivi13g00182 . 103 474 Sulfurtransferasese/Rhodanese gene family AT2G40760 74.462 0.0 566.0
Vivi8g01244 . 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 69.565 1.95e-118 335.0
Vivi8g01134 . 17 146 Sulfurtransferasese/Rhodanese gene family AT5G03455 77.692 4.56e-73 213.0
Vivi19g01124 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.354 0.0 570.0
Vivi6g00993 . 25 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 57.447 3.74e-109 317.0
Vivi19g00557 . 69 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 75.124 0.0 633.0
Vivi5g01349 . 212 345 Sulfurtransferasese/Rhodanese gene family AT5G23060 33.333 2.97e-17 82.4
Vivi16g00997 . 1 217 Sulfurtransferasese/Rhodanese gene family AT4G27700 69.869 1.72e-111 317.0