AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01131 | ATGGGGACAAATGAGGTTGCAATTATTGAAGATCATGGAACAATTAATACTAATACAAACAGTATTAGGAGGAAGACTCCCCTCCAGCTTAAAACTCTCGAGAGCTTGTATTCGGAGGATAACTATCCCACACAAAGGGTTATGAAAGATTATGCTGCGGCTTTAGGATTGACATACAAGCAGGTCAGGGGATGGTTTTTTGAGAGGAGAAGAAAAGAGAAAAATGAAAATGGTATGGGAGTATCATCAAGAAACATGTCTTCATCTTCAACATACAACAGGGCATGCCTTGGGGCTCACCATTGGCATTGTTTTCGCAATCATGACTCTAGGGCTGTTGAGAGAGGGAAAATTTTGAATGAAGACTTATCAACTACAGATTACATACTGAAGAAGGTGTTCCGAAAGGATGGTCCCCCCCTTGGTGTGGAGTTTGATTCTCTACCTTCTAGTTCATTTTGCCATTGTACAGATTCCAGAAACTCCCATCGTACTTGCCAAGAGAACCAAACATCTTCCAAAAGGAGAAAGGTGGTGGTGTCCAAGCCTGCTGTTTTACACCAGCAGTTTTGCAATAATAAGAGTGCTCCAGCAAAAATACACGGTATTGGAAAAGGTTTGATGACAGTCTGGAGGGCAACAAATCCCGGTGCTGGAGATTTTCCTACTGGCATTGATTTTGCTGATGGACAAGTTGCTGCTGTATCTCCAACTTCAACTTCTATACTAAGAAAGTCACTAATAAAAAAGAAAAAGCCACGAAAACAGTCATCCGTTACTAAATGGAAAAGTGTAGGTGGTAAATTGAATGATAAAAAGAAGCCTTCAAGAAAAAGGGGAAAGGTGGAATGTAATAAAGATGTGAATCAGAAGAAGCCAAATAAAGAGAAATGTGAACTTGCTCTAGAAGAAGGGAAATCTCAAGAACACCTTGATCAGTTTGCAATGCTGATGGATGATGAGGAGCTGGAGCTTCAAGAATCGCAGGCAGGACCAAATCCTGTGACATGCTCTGCTCATTTTGCTACCAATGGACTACATGGCTGTTCACTTTGCAAAGATTTGCTGGCCAAATTTCCTCCCAATGCTGTTAAGATGAAGCAACCATTCTGTATGCAACCTTGGGATTCTTCTCCAGAGCTTGTCAAGAAAATGTTCAAGGTCCTTCATTTTCTATATACTTACTCTGTAGTAGTTGATGTATGCCCCTTTACCCTTGATGAATTTGCTCAAGCATTTCATGATGAGGATTCTTTGTTGCTTGGAAAAGTTCATCTGGCCCTTCTCAACCTTCTTTTGTCTGATGTGGAAACAGAGCTGAGCAGTGGGTTTCTCCCTCATGTGATTAAAAACTGCAAGTTTCTTGGGTTACTTCAATCGGTTGGACAAAATGAGTTTGTGCTGAAGTTTTGGAAGAGATCTCTGAATCCTTTAACATGGACAGAAATACTGCGTCAAGTTTTGGTTGCAGCTGGTTTTGGTTCAAGAAAAGGTACATTGCGGAGGGAAGCCCTTGATAAGAAAGCAGGCTTGAAAGGAAGAGTAGTTCCATTTTGCTTGATGGTTGATTGTTTACTCAAATGTTTGCTTCCTTTTTATTTTCCCCTTGCCCCCATGTTTGAACTGAATCCTATGGTAAAGTATGGCTTACGTCCTGGTACTTTGAAGGGTGAACTGTTTAGTATTTTATCGAATCAAGGAAATAATGGTATGAAAGTTCCAGACTTGGCAAGGTGTGTGCAGATTTCTGAATTGAATCTTGCTGGCACGACTGATGAGCTGGAACTTCTAATATATTCTACCCTTTCAAGTGACATTACTTTATATGAAAAGATTTCTAGCTCTTCATATCGTCTACGCATTACTTCTCACACAAATGAAGCTGAAAATTTTCAATCAGATACTGATGACTCTGGAAGCATTGACGATGACTCTAAGGACAGCAGAAAATATAGCAGTAGCGATGATTCTGACTCTGATTCAGGAACTTCCAATTTAGGGAAACTGAATTATATGAACCATCATAAACAGAGAAATGGCATGTTGACTATATATACTGAAATTGATGAGAGCAATCCAGGAGAAGTATGGTTATTAGGATTGATGGAGGGTGAATATTCAGATTTAAGCATTGAAGAGAAGCTCAATGCCTTAATGGCTTTGGTTGATCTTGTTAGTGGTGGAAGCAGTATCAGAATGGAGGATCTTACAAAAGCGGTAGTAGAATATGTTCCTAACATCCATCATTATGGTTCTGGAGCAAAAATAAAGAGATCATATACAAAGCAACACAACTTGCCCACACCAGCACGGGGCCACTTTGGACAAATGCTTGGTGGAAAGGAAATAAATCCATCATCTGAGTTATGCCCAGTTGATTCTTCCACATCAATCTCAAAATTCCATGGGAAAGAAAAGTTCTCTAGCAAAAGAAAGGAGACAAGAGAAGCAGAAGTTGGGTTGGATTTACATCCTATGCAATCTGTCTTTTTGGGGCCTGATCGAAGGTATAATAGATACTGGCTTTTCTTAGGCCCTTGTAATGCAAATGATCCTGGTCACAAGAGGGTGTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCTTTTTGTGCCTTGCTGTCAGTGTTGGATGGCAGGGGTAAGCGGGAGGCTTTTCTTCTTGCATCTTTAGAGAAACGGAAAGCTTCTCTCTGCCAAGAAATGTCAAGCAGAATAGCAATCCATTCTGGAAGCACGTCATTGACACAATATGATAGATCTGACCTGTATATGATTAGAGAAGATAGTTCTTCTCCAGTATCTGATATAGTAGACAACCCATGCGCAACTGATATTACCAATGATTTTTTGGCTTCATCTGGTGCCATAGTTCTTGGAGTTGGAAAGAAGGGAGAAGAGCAAAAACAAAGATGGCGCCGGCTCCAGGAATTTGATGCATGGATATGGAGTTCTTTTTACTCTGATCTTAATGCTGTAAAACATGGCAAGAGGACTTATCTTGATTCACTCGCTAGATGTGAAAGTTGTCATGATCTGTATTGGCGGGATGAAAAGCACTGTAAAACTTGTCATACCACTTTTGAGCTTGATTTTGATCTCGAAGAAAAATATGCGATTCATATAGCGACATGCAGGGAGAAAGAAGACAATGACATGTTTCCAAAGCATAAGGTGCTATCATCACAGTTACAGTCATTGAAAGCTGCAATTCACGCAATTGAGTCAGTCATGCCTGAAGATGCCTTAGTGGAGGCTTGGTCAAAATCTGCTCATAAGCTTTGGGTCAGACGCCTCAGACGCACTTCATATTTGACAGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAAAGAGGACTGGTTGTGTCAGTCCGATGTTGTGCTAGGTTCTAATAATCTTTTGGAAGAAATTGTTGTATCATTTTCAACTATGCCCCAAACATCATCTGCAGTTGCACTCTGGTTGGTGAAGTTGGATGCCTTGATTGCACCCCATCTGGAGAGGGTTCAACTTCATTCTAAAAAGAGAACAAGAAATTAG | 3567 | 40.57 | MGTNEVAIIEDHGTINTNTNSIRRKTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWFFERRRKEKNENGMGVSSRNMSSSSTYNRACLGAHHWHCFRNHDSRAVERGKILNEDLSTTDYILKKVFRKDGPPLGVEFDSLPSSSFCHCTDSRNSHRTCQENQTSSKRRKVVVSKPAVLHQQFCNNKSAPAKIHGIGKGLMTVWRATNPGAGDFPTGIDFADGQVAAVSPTSTSILRKSLIKKKKPRKQSSVTKWKSVGGKLNDKKKPSRKRGKVECNKDVNQKKPNKEKCELALEEGKSQEHLDQFAMLMDDEELELQESQAGPNPVTCSAHFATNGLHGCSLCKDLLAKFPPNAVKMKQPFCMQPWDSSPELVKKMFKVLHFLYTYSVVVDVCPFTLDEFAQAFHDEDSLLLGKVHLALLNLLLSDVETELSSGFLPHVIKNCKFLGLLQSVGQNEFVLKFWKRSLNPLTWTEILRQVLVAAGFGSRKGTLRREALDKKAGLKGRVVPFCLMVDCLLKCLLPFYFPLAPMFELNPMVKYGLRPGTLKGELFSILSNQGNNGMKVPDLARCVQISELNLAGTTDELELLIYSTLSSDITLYEKISSSSYRLRITSHTNEAENFQSDTDDSGSIDDDSKDSRKYSSSDDSDSDSGTSNLGKLNYMNHHKQRNGMLTIYTEIDESNPGEVWLLGLMEGEYSDLSIEEKLNALMALVDLVSGGSSIRMEDLTKAVVEYVPNIHHYGSGAKIKRSYTKQHNLPTPARGHFGQMLGGKEINPSSELCPVDSSTSISKFHGKEKFSSKRKETREAEVGLDLHPMQSVFLGPDRRYNRYWLFLGPCNANDPGHKRVYFESSEDGHWEVIDTEEAFCALLSVLDGRGKREAFLLASLEKRKASLCQEMSSRIAIHSGSTSLTQYDRSDLYMIREDSSSPVSDIVDNPCATDITNDFLASSGAIVLGVGKKGEEQKQRWRRLQEFDAWIWSSFYSDLNAVKHGKRTYLDSLARCESCHDLYWRDEKHCKTCHTTFELDFDLEEKYAIHIATCREKEDNDMFPKHKVLSSQLQSLKAAIHAIESVMPEDALVEAWSKSAHKLWVRRLRRTSYLTELLQVLADFVGAIKEDWLCQSDVVLGSNNLLEEIVVSFSTMPQTSSAVALWLVKLDALIAPHLERVQLHSKKRTRN* | 1189 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01131 | 1188 | MobiDBLite | consensus disorder prediction | 246 | 290 | - | - | |
| Vivi19g01131 | 1188 | ProSiteProfiles | DDT domain profile. | 379 | 438 | IPR018501 | - | |
| Vivi19g01131 | 1188 | MobiDBLite | consensus disorder prediction | 657 | 672 | - | - | |
| Vivi19g01131 | 1188 | FunFam | Homeodomain-like transcriptional regulator | 12 | 91 | - | - | |
| Vivi19g01131 | 1188 | MobiDBLite | consensus disorder prediction | 266 | 290 | - | - | |
| Vivi19g01131 | 1188 | ProSiteProfiles | 'Homeobox' domain profile. | 26 | 76 | IPR001356 | GO:0003677(InterPro) | |
| Vivi19g01131 | 1188 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 827 | 901 | IPR028941 | - | |
| Vivi19g01131 | 1188 | CDD | homeodomain | 23 | 77 | IPR001356 | GO:0003677(InterPro) | |
| Vivi19g01131 | 1188 | SMART | testlast3 | 379 | 438 | IPR018501 | - | |
| Vivi19g01131 | 1188 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 693 | 733 | IPR028942 | - | |
| Vivi19g01131 | 1188 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 17 | 195 | IPR044977 | GO:0006357(InterPro) | |
| Vivi19g01131 | 1188 | Pfam | DDT domain | 380 | 435 | IPR018501 | - | |
| Vivi19g01131 | 1188 | Pfam | Homeodomain | 25 | 75 | IPR001356 | GO:0003677(InterPro) | |
| Vivi19g01131 | 1188 | SMART | HOX-1 | 19 | 80 | IPR001356 | GO:0003677(InterPro) | |
| Vivi19g01131 | 1188 | SUPERFAMILY | Homeodomain-like | 19 | 76 | IPR009057 | - | |
| Vivi19g01131 | 1188 | MobiDBLite | consensus disorder prediction | 629 | 672 | - | - | |
| Vivi19g01131 | 1188 | MobiDBLite | consensus disorder prediction | 642 | 656 | - | - | |
| Vivi19g01131 | 1188 | Gene3D | - | 12 | 93 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01131 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr12:3840176 | Vivi19g01131 | Vivi-Chr19:22688699 | dispersed | |
| Vivi | Vivi-Chr19:22688699 | Vivi6g01017 | Vivi-Chr6:16796502 | dispersed | |
| Vivi | Vivi-Chr19:22688699 | Vivi10g00141 | Vivi-Chr10:1562230 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi13g01249 | . | 1 | 314 | Homeobox Transcription Factor family | AT5G06710 | 51.754 | 3.51e-98 | 293.0 | |
| Vivi19g00464 | . | 528 | 716 | Homeobox Transcription Factor family | AT1G05230 | 49.735 | 1.08e-52 | 177.0 | |
| Vivi19g00465 | . | 614 | 714 | Homeobox Transcription Factor family | AT1G05230 | 43.564 | 8.98e-19 | 78.6 | |
| Vivi7g00895 | . | 1 | 294 | Homeobox Transcription Factor family | AT4G40060 | 46.178 | 7.29e-79 | 239.0 | |
| Vivi17g00773 | . | 1 | 327 | Homeobox Transcription Factor family | AT1G23380 | 60.976 | 2.92e-128 | 367.0 | |
| Vivi17g00499 | . | 10 | 169 | Homeobox Transcription Factor family | AT3G01470 | 49.102 | 3.56e-43 | 146.0 | |
| Vivi17g00165 | . | 193 | 233 | Homeobox Transcription Factor family | AT4G08150 | 51.22 | 4.24e-08 | 46.2 | |
| Vivi18g00449 | . | 1 | 287 | Homeobox Transcription Factor family | AT4G40060 | 41.497 | 7.99e-60 | 191.0 | |
| Vivi18g00590 | . | 65 | 398 | Homeobox Transcription Factor family | AT4G08150 | 67.953 | 4.43e-152 | 431.0 | |
| Vivi18g00591 | . | 1 | 267 | Homeobox Transcription Factor family | AT4G37790 | 53.763 | 2.47e-79 | 240.0 | |
| Vivi18g00877 | . | 394 | 738 | Homeobox Transcription Factor family | AT4G36870 | 53.867 | 5.23e-115 | 348.0 | |
| Vivi18g00878 | . | 10 | 66 | Homeobox Transcription Factor family | AT2G23760 | 45.614 | 1.57e-08 | 52.8 | |
| Vivi18g01005 | . | 10 | 280 | Homeobox Transcription Factor family | AT1G75430 | 58.423 | 2.56e-105 | 313.0 | |
| Vivi18g01007 | . | 119 | 532 | Homeobox Transcription Factor family | AT4G34610 | 47.788 | 9.61e-115 | 348.0 | |
| Vivi16g00616 | . | 103 | 798 | Homeobox Transcription Factor family | AT4G00730 | 56.901 | 0.0 | 795.0 | |
| Vivi11g00914 | . | 91 | 527 | Homeobox Transcription Factor family | AT4G29940 | 60.592 | 6.28e-162 | 485.0 | |
| Vivi7g00237 | . | 1 | 450 | Homeobox Transcription Factor family | AT4G02560 | 58.386 | 5.19e-166 | 513.0 | |
| Vivi8g00238 | . | 166 | 497 | Homeobox Transcription Factor family | AT2G35940 | 64.912 | 2.54e-123 | 374.0 | |
| Vivi14g01511 | . | 7 | 294 | Homeobox Transcription Factor family | AT1G69780 | 50.498 | 1.23e-85 | 256.0 | |
| Vivi1g00421 | . | 74 | 250 | Homeobox Transcription Factor family | AT2G01430 | 65.816 | 1.19e-79 | 238.0 | |
| Vivi10g00026 | . | 1 | 738 | Homeobox Transcription Factor family | AT4G04890 | 80.811 | 0.0 | 1220.0 | |
| Vivi11g00601 | . | 1 | 423 | Homeobox Transcription Factor family | AT5G25220 | 63.677 | 3.05e-180 | 507.0 | |
| Vivi2g00724 | . | 1 | 824 | Homeobox Transcription Factor family | AT5G46880 | 58.796 | 0.0 | 934.0 | |
| Vivi1g00659 | . | 1 | 327 | Homeobox Transcription Factor family | AT1G23380 | 68.693 | 4.40e-153 | 430.0 | |
| Vivi19g00172 | . | 1 | 145 | Homeobox Transcription Factor family | AT5G53980 | 44.805 | 6.27e-30 | 112.0 | |
| Vivi13g00514 | . | 24 | 842 | Homeobox Transcription Factor family | AT5G60690 | 70.339 | 0.0 | 1192.0 | |
| Vivi9g00302 | . | 3 | 836 | Homeobox Transcription Factor family | AT1G52150 | 87.112 | 0.0 | 1511.0 | |
| Vivi15g00340 | . | 52 | 310 | Homeobox Transcription Factor family | AT3G60390 | 59.353 | 1.30e-91 | 273.0 | |
| Vivi15g00332 | . | 83 | 204 | Homeobox Transcription Factor family | AT1G23380 | 63.115 | 1.30e-48 | 158.0 | |
| Vivi4g00927 | . | 1 | 215 | Homeobox Transcription Factor family | AT4G36740 | 57.407 | 6.22e-73 | 218.0 | |
| Vivi4g00900 | . | 232 | 625 | Homeobox Transcription Factor family | AT2G23760 | 63.357 | 3.98e-163 | 481.0 | |
| Vivi2g00025 | . | 105 | 611 | Homeobox Transcription Factor family | AT5G41410 | 52.559 | 1.85e-144 | 424.0 | |
| Vivi2g00240 | . | 6 | 258 | Homeobox Transcription Factor family | AT2G46680 | 38.189 | 7.05e-38 | 130.0 | |
| Vivi2g00420 | . | 1 | 290 | Homeobox Transcription Factor family | AT1G62990 | 78.114 | 1.99e-171 | 474.0 | |
| Vivi1g00879 | . | 7 | 294 | Homeobox Transcription Factor family | AT1G69780 | 64.138 | 3.70e-116 | 333.0 | |
| Vivi1g00846 | . | 32 | 219 | Homeobox Transcription Factor family | AT3G01470 | 45.146 | 2.24e-44 | 151.0 | |
| Vivi1g00844 | . | 1 | 205 | Homeobox Transcription Factor family | AT1G27050 | 45.673 | 1.01e-53 | 168.0 | |
| Vivi12g00250 | . | 173 | 1607 | Homeobox Transcription Factor family | AT5G44180 | 51.592 | 0.0 | 1314.0 | |
| Vivi10g00141 | . | 45 | 1646 | Homeobox Transcription Factor family | AT1G28420 | 48.26 | 0.0 | 1315.0 | |
| Vivi10g00529 | . | 12 | 852 | Homeobox Transcription Factor family | AT2G34710 | 80.473 | 0.0 | 1398.0 | |
| Vivi7g01304 | . | 550 | 687 | Homeobox Transcription Factor family | AT1G28420 | 31.915 | 1.37e-07 | 53.5 | |
| Vivi3g00004 | . | 3 | 532 | Homeobox Transcription Factor family | AT4G34610 | 48.962 | 1.82e-160 | 467.0 | |
| Vivi6g00802 | . | 533 | 563 | Homeobox Transcription Factor family | AT4G36870 | 80.645 | 5.19e-12 | 57.0 | |
| Vivi6g00801 | . | 419 | 444 | Homeobox Transcription Factor family | AT2G23760 | 73.077 | 3.73e-08 | 44.7 | |
| Vivi6g00262 | . | 1 | 842 | Homeobox Transcription Factor family | AT5G60690 | 83.059 | 0.0 | 1463.0 | |
| Vivi6g00240 | . | 251 | 502 | Homeobox Transcription Factor family | AT2G27990 | 49.836 | 4.82e-88 | 286.0 | |
| Vivi15g00640 | . | 47 | 258 | Homeobox Transcription Factor family | AT2G46680 | 50.472 | 2.90e-60 | 187.0 | |
| Vivi15g00561 | . | 1 | 802 | Homeobox Transcription Factor family | AT4G00730 | 68.978 | 0.0 | 1113.0 | |
| Vivi17g00989 | . | 31 | 662 | Homeobox Transcription Factor family | AT1G73360 | 69.375 | 0.0 | 907.0 | |
| Vivi12g00425 | . | 126 | 382 | Homeobox Transcription Factor family | AT1G62360 | 78.21 | 1.31e-131 | 375.0 | |
| Vivi12g00521 | . | 3 | 721 | Homeobox Transcription Factor family | AT1G05230 | 77.687 | 0.0 | 1163.0 | |
| Vivi14g00102 | . | 57 | 323 | Homeobox Transcription Factor family | AT1G23380 | 50.871 | 3.97e-92 | 275.0 | |
| Vivi14g01377 | . | 18 | 272 | Homeobox Transcription Factor family | AT3G01470 | 60.075 | 4.56e-95 | 278.0 | |
| Vivi8g01280 | . | 168 | 314 | Homeobox Transcription Factor family | AT5G06710 | 81.633 | 8.19e-83 | 249.0 | |
| Vivi8g01067 | . | 25 | 235 | Homeobox Transcription Factor family | AT5G03790 | 50.463 | 9.61e-59 | 183.0 | |
| Vivi8g00809 | . | 1 | 573 | Homeobox Transcription Factor family | AT5G02030 | 47.563 | 6.73e-135 | 402.0 | |
| Vivi4g00715 | . | 31 | 714 | Homeobox Transcription Factor family | AT1G73360 | 48.927 | 0.0 | 670.0 | |
| Vivi4g00068 | . | 159 | 446 | Homeobox Transcription Factor family | AT4G32980 | 54.574 | 4.56e-110 | 327.0 | |
| Vivi4g00277 | . | 4 | 836 | Homeobox Transcription Factor family | AT1G52150 | 81.959 | 0.0 | 1430.0 | |
| Vivi4g00540 | . | 216 | 430 | Homeobox Transcription Factor family | AT5G25220 | 89.45 | 6.57e-147 | 414.0 | |
| Vivi19g01131 | . | 452 | 1404 | Homeobox Transcription Factor family | AT5G44180 | 27.8 | 8.69e-78 | 280.0 | |
| Vivi6g01017 | . | 4 | 507 | Homeobox Transcription Factor family | AT4G03250 | 42.035 | 3.02e-95 | 296.0 | |
| Vivi6g00921 | . | 491 | 536 | Homeobox Transcription Factor family | AT3G19510 | 50.0 | 3.09e-06 | 41.2 | |
| Vivi6g00820 | . | 1 | 680 | Homeobox Transcription Factor family | AT2G35940 | 45.621 | 8.66e-144 | 429.0 | |
| Vivi3g00656 | . | 136 | 673 | Homeobox Transcription Factor family | AT3G19510 | 50.615 | 3.93e-138 | 429.0 | |
| Vivi16g00986 | . | 33 | 235 | Homeobox Transcription Factor family | AT3G61890 | 45.32 | 3.11e-47 | 154.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Vivi | WSD | 2.4e-12 | No_clan | TF | HB-other |