AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01132 ATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCTAAAATACCAGAAGGTGGGGTTCTCCTCCTTGAGAATGTGAGGTTTTACAAGGAGGAAGAGAAGAATGACCCTGAATTTGCCAAGAAGCTAGCTTCACTTGCAGATCTCTATGTGAATGATGCATTTGGAACCGCTCACAGAGCCCATGCATCTACAGAGGGAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAATCCTTGTTGGGGAAGGTTGATGTCCTGCTTTTGGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGTTACGGTGTTGGTTCCTCCCTTGTAGAGGAAGACAAGCTGGATCTTGCAACTTCACTTCTTGAAAAGGCCAAGTCCAAAGGTGTCTCACTACTTCTCCCCGCAGATGTTGTGATTGCTGACAAGTTTGCTGCTGATGCTAACAGCAAGGTTGTCCCTGCATCCTGTATTCCAGATGGTTGGATGGGGCTGGATATCGGACCTGACTCTATCAAGACTTTTGGCGAATCTTTAGATACTACCAAAACCATCATTTGGAATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTGAAAAGATGAGCCACATCTCAACCGGCGGTGGTGCCAGCTTGGAGTTGCTGGAGGGGAAGACATTGCCTGGAGTCCTTGCACTTGACGACGCCTGA 1050 47.9 MGHGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVKILVAKIPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLDLATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSIKTFGESLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKTLPGVLALDDA* 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01132 349 Pfam Phosphoglycerate kinase 3 338 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 SUPERFAMILY Phosphoglycerate kinase 2 348 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 Gene3D - 122 338 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 FunFam Phosphoglycerate kinase 137 324 - -
Vivi19g01132 349 PIRSF Pgk 1 349 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 Hamap Phosphoglycerate kinase [pgk]. 2 348 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 Gene3D - 3 346 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 CDD Phosphoglycerate-kinase 3 348 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 PRINTS Phosphoglycerate kinase family signature 265 290 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 PRINTS Phosphoglycerate kinase family signature 19 41 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 PRINTS Phosphoglycerate kinase family signature 301 312 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 PRINTS Phosphoglycerate kinase family signature 324 341 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01132 349 FunFam Phosphoglycerate kinase 1 132 - -
Vivi19g01132 349 PANTHER PHOSPHOGLYCERATE KINASE 2 349 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01132 K00927 phosphoglycerate kinase [EC:2.7.2.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:22721760 Vivi19g01133 Vivi-Chr19:22741010 tandem