AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01133 ATGGCCAAGAAGAGCGTGGGTGACCTCACGGGGGCGGATTTGAAGGGGAAGAAGGTGTTTGTGAGGGTGGATTTGAATGTGCCTCTTGATGACAACCAGAAGATTACTGACGATACCAGGGTTCGAGCTGCCATTCCCACTATCAAGTATTTGATCGACAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGACCAAAGGGAGTAACTCCAAAATTCAGCTTGGCGCCTCTTGTGCCAAGGTTATCTGAGCTTCTTGGCATTCAGATTGTGAAGGCTGATGACTGTATTGGCCCAGAGGTAGAAAAGTTAGTGACTGCACTTCCTGATGGTGGTGTACTCCTTCTCGAGAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGAACCCGAATTTGCAAAGAAGCTTGCCTCCATAGCTGATCTCTATGTGAATGATGCATTTGGTACTGCACATAGAGCCCATGCCTCAACTGAGGGGGTCACTAAGTTCTTGAAGCCATCTGTTGCTGGTTTCCTTTTACAGAAGGAACTGGACTATCTCGTTGGGGCAGTTTCAAGCCCAAAGAGGCCATTTGCTGCCATTGTGGGTGGTTCAAAGGTCTCATCCAAGATCGGAGTCATTGAATCTCTCCTCGAAAAGTGTGATATCCTACTTCTAGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTCTCTCAGTGGGTTCATCCCTGGTAGAGGAAGATAAGCTAAGCCTTGCTACATCACTTCTCGAGAAGGCCAAGGCAAAAGGAGTATCTCTCCTGCTACCCACCGATGTTGTGATTGCTGACAAGTTTGCCCCTGATGCAAACAGCAAGATTGTGCCAGCATCAGCCATTCCTGATGGATGGATGGGATTGGATATTGGACCTGATTCTATTAAGATATTCAATGAAGCTTTGGAGACCACCAAAACAGTTATCTGGAACGGACCGATGGGAGTGTTTGAGTTTGATAAGTTTGCAGAAGGAACAGTGGCCGTTGCAAAGAAGCTAGCGGAGCTGAGTGGGAAGGATGTGACAACAATCATTGGAGGTGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTCGCTGATGTGATGAGCCACATATCAACGGGTGGAGGTGCCAGTTTGGAGTTGTTGGAAGGGAAAGAACTCCCTGGTGTTGTTGCCCTTGATGAAGCTACTCCAGTTCCAGTGTAA 1218 47.13 MAKKSVGDLTGADLKGKKVFVRVDLNVPLDDNQKITDDTRVRAAIPTIKYLIDNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQIVKADDCIGPEVEKLVTALPDGGVLLLENVRFYKEEEKNEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLSLATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKIFNEALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVPV* 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01133 405 FunFam Phosphoglycerate kinase 188 375 - -
Vivi19g01133 405 SUPERFAMILY Phosphoglycerate kinase 8 399 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 Gene3D - 186 399 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PANTHER PHOSPHOGLYCERATE KINASE 1 400 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Vivi19g01133 405 FunFam Phosphoglycerate kinase 10 183 - -
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 316 341 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 13 29 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 112 127 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 140 162 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 35 57 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 194 213 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 375 392 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 171 193 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PRINTS Phosphoglycerate kinase family signature 352 363 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 Pfam Phosphoglycerate kinase 12 389 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 ProSitePatterns Phosphoglycerate kinase signature. 18 28 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 Gene3D - 7 183 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 CDD Phosphoglycerate-kinase 9 399 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 PIRSF Pgk 1 404 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Vivi19g01133 405 Hamap Phosphoglycerate kinase [pgk]. 8 399 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01133 K00927 phosphoglycerate kinase [EC:2.7.2.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:22721760 Vivi19g01133 Vivi-Chr19:22741010 tandem