AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01134 ATGGCTTGGAGCTTCACACCGGATGGTCTCATGGCTTTGAATTTTCCTTCCTTCCATCCCCAAAATTCCCCTCAGTTTCTCTCTTCCCAAACAAAACTTCGCCCATTTTCCTTCCGTTTTTCTCTTCCCAAAAACCAGAAGCCAAGAGCCCTGCGAGAATGGCGGGAGTACGAAGATGCCGTGAAGGAGAAAGACCTCGCTCGAGCCCTTCGGTTCTTGAAATCCGTGGAGACCAATCCAATCGAGCCATTCAACGATTCTTCTTCTTCGGATCTGGGGTTGGTTCAATCGGAGAGGGATTGGGAGGTTCTGGACGCCTGTTTGAATGCAGATGATATGAAGCTTGTTGGGAGCGCCTATTCGTTCCTCAAGAACAGAGGCTTCTTGCCCAATTTCGGAAAATGCAGAAATATTGTTTTGGAGGGATCAAGAGATGTTACGCCAACTGTGTTGAAGACTTCAACTGGTTTAGAAGTGTCTAAACTTTCACCAAAAAAATGGGGTCTTTCGGGAGGCTCAAGTGCTGCTTTAGCAGCTTTTCTTGGTGGGGTATCTCTTCTTCTTTCTCGAGGGATCGATATCAGACCTAACCTTGCAGCCATACTTGGTCTTGCTATCATAGATGCTGTCTTCCTCGGTGGTTCTTGTTTAGCTCAAATTTCAAGTTATTGGCCTCCATATAGGCGTCGGATCCTAGTTCATGAAGCAGGCCATCTGCTGACTGCTTACCTTATGGGTTGCCCAATTCGTGGGGTGATTTTAGACCCAATAGTTGCAATGCAAATGGGCATTCAAGGCCAGGCAGGGACTCAATTTTGGGATGAGAAACTGGAAAAAGAGTTAGCTGAAGGCCGCCTAAGTGGTACTACCTTTGACCGATACTGTATGGTCCTTTTTGCTGGAATTGCAGCTGAAGCTCTTGTTTATGGTGAGGCCGAGGGTGGAGAAAATGATGAGAACTTGTTCAGGAGCATTTGCGTTCTTCTGCGACCTCCATTAACTATTGGACAGATGTCAAATCAGGCAAGATGGTCAGTTCTGCAGTCCTACAACCTGCTCAAATGGCACAAACATGCCCACCGAGCTGCTGTCAAAGCTCTAGAGAGCGGTGGCAGTCTGAGTGTTGTCATCAGGAGGATCGAGGAAGCCATGTCTTCCAGTAGGTGA 1167 47.47 MAWSFTPDGLMALNFPSFHPQNSPQFLSSQTKLRPFSFRFSLPKNQKPRALREWREYEDAVKEKDLARALRFLKSVETNPIEPFNDSSSSDLGLVQSERDWEVLDACLNADDMKLVGSAYSFLKNRGFLPNFGKCRNIVLEGSRDVTPTVLKTSTGLEVSKLSPKKWGLSGGSSAALAAFLGGVSLLLSRGIDIRPNLAAILGLAIIDAVFLGGSCLAQISSYWPPYRRRILVHEAGHLLTAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKLEKELAEGRLSGTTFDRYCMVLFAGIAAEALVYGEAEGGENDENLFRSICVLLRPPLTIGQMSNQARWSVLQSYNLLKWHKHAHRAAVKALESGGSLSVVIRRIEEAMSSSR* 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01134 388 FunFam ATP-dependent zinc metalloprotease 223 376 - -
Vivi19g01134 388 SUPERFAMILY FtsH protease domain-like 224 373 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Vivi19g01134 388 Gene3D Peptidase M41 222 376 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Vivi19g01134 388 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE-RELATED 57 385 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01134 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr14:4330836 Vivi19g01134 Vivi-Chr19:22763855 dispersed