Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01150 | ATGGAAGCGGGGATTACCAATATTTTTATCCTTCACTGGGACACAACACGAGGGCATTTTGAATTTCTCACACAACCCATCAACCATCTCTCATATATTCGGTTTCCTTCTCCAAATTCACAAAAAATGCACAAATTGGGTAGAGGTCACCGGGACAAAGTCCAGCAATTCATGGCAATAACTGGGGCAAGTGAAAAAGTTGCTCTTCATGCTTTGAAGGCCAGTGATTGGCATCTTGAAGGAGCATTTGATGTATTTTACAGTCAGCCCCAGATTAAAGCATTTACTGATTCTAGACATTTGGAGGAGCTTTACAGTAGATATAAAGATCCATATGTTGATATGATAATGGCTGATGGCATCTCCGTCCTTTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTCTCATGGCACATGAAGGCTGCCACAATGTGCGAATTTTCAAAACAGGAGTTCATTAGTGGATTGCAAGCATTGGGGATAGATTCACTGGAGAAATTTCGTGAGAGGATACAATTCATGCGTACTGAGCTGAAAGATGAACAAAAGTTCCGTGAGATATACAACTTTGCTTTTGGCTGGGCTAAAGAAAAGGGTCAGAAATCTTTGGCATTGGATACTGCAATTGGTATGTGGCAGTTACTATTTGCTGAAAAGCAATGGGCGTTGGTTGATCACTGGTGCCAGTTCCTACAGGCTCGACATAATAAAGCAATCTCTAGGGACACCTGGTCTCAATTATTGGAGTTTGCAAAGACTGTGGATCCTTCACTGTCTAATTATGATGCTGAAGGAGCTTGGCCGTATCTCATTGATGAGTTTGTGGAGTACTTGAATGAGAACAACATCATCCAAAAGGGCCAGCCGATTGACTGGAGCCTAAAACGAATAAAGAGACCAACAAAGGAAAAATAA | 930 | 41.51 | MEAGITNIFILHWDTTRGHFEFLTQPINHLSYIRFPSPNSQKMHKLGRGHRDKVQQFMAITGASEKVALHALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYSRYKDPYVDMIMADGISVLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFISGLQALGIDSLEKFRERIQFMRTELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWALVDHWCQFLQARHNKAISRDTWSQLLEFAKTVDPSLSNYDAEGAWPYLIDEFVEYLNENNIIQKGQPIDWSLKRIKRPTKEK* | 310 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01150 | 309 | CDD | UBA-DCNL | 50 | 90 | - | - | |
| Vivi19g01150 | 309 | Gene3D | - | 95 | 184 | - | - | |
| Vivi19g01150 | 309 | FunFam | Defective in cullin neddylation protein | 185 | 290 | - | - | |
| Vivi19g01150 | 309 | Gene3D | - | 48 | 89 | - | - | |
| Vivi19g01150 | 309 | SUPERFAMILY | UBA-like | 49 | 88 | IPR009060 | GO:0005515(InterPro) | |
| Vivi19g01150 | 309 | Pfam | UBA-like domain | 51 | 90 | - | - | |
| Vivi19g01150 | 309 | Gene3D | Cullin, PONY binding domain | 185 | 293 | IPR042460 | - | |
| Vivi19g01150 | 309 | ProSiteProfiles | DCUN1 domain profile. | 96 | 284 | IPR005176 | - | |
| Vivi19g01150 | 309 | FunFam | Defective in cullin neddylation protein | 95 | 184 | - | - | |
| Vivi19g01150 | 309 | Pfam | Cullin binding | 172 | 282 | IPR005176 | - | |
| Vivi19g01150 | 309 | PANTHER | RP42 RELATED | 66 | 286 | IPR014764 | GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER) | |
| Vivi19g01150 | 309 | FunFam | Defective in cullin neddylation protein | 48 | 89 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01150 | K17822 | DCN1-like protein 1/2 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr14:29590446 | Vivi19g01150 | Vivi-Chr19:23045181 | dispersed |