AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01150 ATGGAAGCGGGGATTACCAATATTTTTATCCTTCACTGGGACACAACACGAGGGCATTTTGAATTTCTCACACAACCCATCAACCATCTCTCATATATTCGGTTTCCTTCTCCAAATTCACAAAAAATGCACAAATTGGGTAGAGGTCACCGGGACAAAGTCCAGCAATTCATGGCAATAACTGGGGCAAGTGAAAAAGTTGCTCTTCATGCTTTGAAGGCCAGTGATTGGCATCTTGAAGGAGCATTTGATGTATTTTACAGTCAGCCCCAGATTAAAGCATTTACTGATTCTAGACATTTGGAGGAGCTTTACAGTAGATATAAAGATCCATATGTTGATATGATAATGGCTGATGGCATCTCCGTCCTTTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTCTCATGGCACATGAAGGCTGCCACAATGTGCGAATTTTCAAAACAGGAGTTCATTAGTGGATTGCAAGCATTGGGGATAGATTCACTGGAGAAATTTCGTGAGAGGATACAATTCATGCGTACTGAGCTGAAAGATGAACAAAAGTTCCGTGAGATATACAACTTTGCTTTTGGCTGGGCTAAAGAAAAGGGTCAGAAATCTTTGGCATTGGATACTGCAATTGGTATGTGGCAGTTACTATTTGCTGAAAAGCAATGGGCGTTGGTTGATCACTGGTGCCAGTTCCTACAGGCTCGACATAATAAAGCAATCTCTAGGGACACCTGGTCTCAATTATTGGAGTTTGCAAAGACTGTGGATCCTTCACTGTCTAATTATGATGCTGAAGGAGCTTGGCCGTATCTCATTGATGAGTTTGTGGAGTACTTGAATGAGAACAACATCATCCAAAAGGGCCAGCCGATTGACTGGAGCCTAAAACGAATAAAGAGACCAACAAAGGAAAAATAA 930 41.51 MEAGITNIFILHWDTTRGHFEFLTQPINHLSYIRFPSPNSQKMHKLGRGHRDKVQQFMAITGASEKVALHALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYSRYKDPYVDMIMADGISVLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFISGLQALGIDSLEKFRERIQFMRTELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWALVDHWCQFLQARHNKAISRDTWSQLLEFAKTVDPSLSNYDAEGAWPYLIDEFVEYLNENNIIQKGQPIDWSLKRIKRPTKEK* 310
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01150 309 CDD UBA-DCNL 50 90 - -
Vivi19g01150 309 Gene3D - 95 184 - -
Vivi19g01150 309 FunFam Defective in cullin neddylation protein 185 290 - -
Vivi19g01150 309 Gene3D - 48 89 - -
Vivi19g01150 309 SUPERFAMILY UBA-like 49 88 IPR009060 GO:0005515(InterPro)
Vivi19g01150 309 Pfam UBA-like domain 51 90 - -
Vivi19g01150 309 Gene3D Cullin, PONY binding domain 185 293 IPR042460 -
Vivi19g01150 309 ProSiteProfiles DCUN1 domain profile. 96 284 IPR005176 -
Vivi19g01150 309 FunFam Defective in cullin neddylation protein 95 184 - -
Vivi19g01150 309 Pfam Cullin binding 172 282 IPR005176 -
Vivi19g01150 309 PANTHER RP42 RELATED 66 286 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Vivi19g01150 309 FunFam Defective in cullin neddylation protein 48 89 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01150 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr14:29590446 Vivi19g01150 Vivi-Chr19:23045181 dispersed