AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01155 ATGGTGGCTGTCAAGGGAAAATTGAATGCAGCTCCAAGTCGAGTTGCAGGAGATAAAAAAAATCGCAAGAGTGTTGGCTTAAGTTTCAAGGTTTATTCTGAGAATGAGAGGGTTAATGTAGGTTCCCGTGATTCTGTTGGTACTAGTAGCACGAGGAAATCTGTGCAGTTCAACAAAGGGACTGTTCAGAGCAATTCAAGTGATTCAAAGGGGAATCTCAAGAGTTTTGAGAAGGACAAAGACAAGCGGAATAGTTCCTTTGTTCGAAGAAAAGCTTTGGCTGATGTCAGCAATGTTCAGGGAAACTGTTCCACTACTAGCATGCGTGACGGGTCCAAATCAGTGGTTACACTGGGTCAAGGCACTATCACTGTTTGTGCCTCATCAAGGAAACCTTCCATGGGTAAAATGGGAACAAATATAAGTCAAGGCGCTGGTGTTTGTAATACTTCAAAGAGAGCAAGTGCAAAAAATTTGAAGGCCTCTTCTAATAACCAAATGACCAAGGATAAGGGCCGTGAATCTGTTAATAATGCTCAAAGGACTGCGAGGCTCTCTCATGTATTGACAAGGAAGTCATTACCAGTTATAAGGAGGGTTAACAAGGTGGACAGAAGTGATCTAAAGCTATTTGAACTCTTTCTTTACTTCATTGAAATCCAGCCTACTTTGAGAACCACAGTCAAGACTTCTAATGTTCAAACTCAAAGGACATTGAAGTCCAAGCGGACATCGGTGTTAGACAAGTCAATATCTGGTGCAGCAATTTCATCCAAGAACAAGGAGAAACTAGTGCCATCTTCTCTTCCCGAAAGTATTGGATTCGTGGGTCCTTATCAACCAGCACAAGGAGAGCTTCCACCTGATGGCAATGCCAGCACTTCTACAAATACCTCAGATATCAATAACAGGAGAAAATCTGATCGCAGGAGATCTTTTACATTGTCATTGATGACAAGATCAAAGCAATTGGAGGAGCATGGTGAATTCAGGAAGCTGGAAAAGTTACCGAGTATAGATGACAATTGCAATCACCTAGAAGTTGCTGAATATGTTGAAGAAATCTACCAGTACTATTGGGTTACAGAGGCGCAGAATCCATCCATGCAAAATTATATGTCAATTCAGTCAGACATCACACCTCAGATGCGGGGCATATTGATCAATTGGCTAATTGAAGTACACTACAAATTTGAATTGATGCAAGAAACACTTTATCTCATGGTCACTTTGTTTGATCGATATCTCTCTCTGGTGCCAATTAAGAAGAATGACATGCAATTGGTTGGCCTTACCGCACTCTTGCTGGCATCTAAGTATGAGGACTTTTGGCATCCAAGGGTTAAAGATTTGATTAGCATTTCAGCAGAGTCATACACAAGAGACCAGATGCTTGGAATGGAGAAGGTTGTTCTTAATAAGTTGAAATTCCGTCTGAATGTACCTACACCATATGTTTTCATGATGAGGTTTCTGAAGGCTGCTCAGTCGGACAAAAGGCTTGAACATCTAGCATTCTACCTCATTGAGCTGTGCTTGGTTGAATACGAGGCTTTGAAGTACAAGCCCTCATTGCTATGTGCATCAGCTATCTATCTTGCGAGGTGCACCTTACAAAGGGCCCCTGCATGGACCCCATTGCTTCACAAGCATGCACGCTATGAAGAATCTCAAATCAGGGACTGTGCTGAGATGATCTTAAAGTTTCAAAAAGCTGCTAGAACAGGGCAGTTGAAAGTCACATACGAGAAATACATGAGGCCTGATCAAAGTGGTGTTGCTGCTATAACACCCTTGAATAGGCTTCCTCGTTAA 1815 41.98 MVAVKGKLNAAPSRVAGDKKNRKSVGLSFKVYSENERVNVGSRDSVGTSSTRKSVQFNKGTVQSNSSDSKGNLKSFEKDKDKRNSSFVRRKALADVSNVQGNCSTTSMRDGSKSVVTLGQGTITVCASSRKPSMGKMGTNISQGAGVCNTSKRASAKNLKASSNNQMTKDKGRESVNNAQRTARLSHVLTRKSLPVIRRVNKVDRSDLKLFELFLYFIEIQPTLRTTVKTSNVQTQRTLKSKRTSVLDKSISGAAISSKNKEKLVPSSLPESIGFVGPYQPAQGELPPDGNASTSTNTSDINNRRKSDRRRSFTLSLMTRSKQLEEHGEFRKLEKLPSIDDNCNHLEVAEYVEEIYQYYWVTEAQNPSMQNYMSIQSDITPQMRGILINWLIEVHYKFELMQETLYLMVTLFDRYLSLVPIKKNDMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKVVLNKLKFRLNVPTPYVFMMRFLKAAQSDKRLEHLAFYLIELCLVEYEALKYKPSLLCASAIYLARCTLQRAPAWTPLLHKHARYEESQIRDCAEMILKFQKAARTGQLKVTYEKYMRPDQSGVAAITPLNRLPR* 605
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01155 604 CDD CYCLIN-AtCycB-like-rpt2 482 598 - -
Vivi19g01155 604 FunFam putative cyclin-B3-1 isoform X3 478 603 - -
Vivi19g01155 604 MobiDBLite consensus disorder prediction 39 89 - -
Vivi19g01155 604 FunFam Cyclin N-terminal domain containing 2 369 477 - -
Vivi19g01155 604 Pfam Cyclin, N-terminal domain 354 480 IPR006671 -
Vivi19g01155 604 Gene3D - 368 474 - -
Vivi19g01155 604 Gene3D - 475 602 - -
Vivi19g01155 604 MobiDBLite consensus disorder prediction 72 89 - -
Vivi19g01155 604 SMART cyclin-7 486 568 IPR013763 -
Vivi19g01155 604 SMART cyclin-7 389 473 IPR013763 -
Vivi19g01155 604 CDD CYCLIN-CCNB1-like-rpt1 348 477 - -
Vivi19g01155 604 MobiDBLite consensus disorder prediction 280 309 - -
Vivi19g01155 604 MobiDBLite consensus disorder prediction 287 301 - -
Vivi19g01155 604 SUPERFAMILY Cyclin-like 344 480 IPR036915 -
Vivi19g01155 604 PIRSF Cyclin-A-B-D-E 48 212 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Vivi19g01155 604 PIRSF Cyclin-A-B-D-E 218 603 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Vivi19g01155 604 Pfam Cyclin, C-terminal domain 482 598 IPR004367 -
Vivi19g01155 604 PANTHER CYCLINS 335 586 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Vivi19g01155 604 SUPERFAMILY Cyclin-like 481 601 IPR036915 -
Vivi19g01155 604 MobiDBLite consensus disorder prediction 39 71 - -
Vivi19g01155 604 SMART Cyclin-C-2 482 599 IPR004367 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01155 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr12:11433649 Vivi19g01155 Vivi-Chr19:23135393 dispersed
Vivi Vivi-Chr14:15400559 Vivi19g01155 Vivi-Chr19:23135393 dispersed
Vivi Vivi-Chr14:15490687 Vivi19g01155 Vivi-Chr19:23135393 dispersed
Vivi Vivi-Chr19:23135393 Vivi8g00490 Vivi-Chr8:11925225 dispersed
Vivi Vivi-Chr19:23135393 Vivi18g00693 Vivi-Chr18:7996242 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g00935 . 2 322 Core Cell Cycle gene family AT4G37630 37.464 3.07e-59 191.0
Vivi7g00942 . 12 304 Core Cell Cycle gene family AT1G76540 30.99 2.04e-41 147.0
Vivi7g00956 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 1.35e-43 150.0
Vivi7g01011 . 90 367 Core Cell Cycle gene family AT5G67260 57.785 2.11e-111 325.0
Vivi12g00600 . 1 298 Core Cell Cycle gene family AT4G03270 51.316 1.22e-89 268.0
Vivi5g00880 . 86 170 Core Cell Cycle gene family AT2G22490 44.186 2.31e-13 62.8
Vivi1g00618 . 19 304 Core Cell Cycle gene family AT1G76540 26.946 1.47e-28 112.0
Vivi3g00609 . 12 367 Core Cell Cycle gene family AT5G67260 50.802 7.43e-121 352.0
Vivi17g00850 . 19 304 Core Cell Cycle gene family AT1G76540 25.816 1.47e-26 107.0
Vivi17g00593 . 18 357 Core Cell Cycle gene family AT5G10270 48.094 1.71e-108 336.0
Vivi17g00254 . 6 391 Core Cell Cycle gene family AT1G18040 74.51 0.0 606.0
Vivi17g00151 . 21 344 Core Cell Cycle gene family AT5G10270 44.88 2.03e-85 271.0
Vivi17g00047 . 18 394 Core Cell Cycle gene family AT5G10270 46.875 1.21e-111 341.0
Vivi18g00229 . 6 459 Core Cell Cycle gene family AT1G44110 60.569 0.0 560.0
Vivi18g00230 . 117 459 Core Cell Cycle gene family AT1G44110 63.265 8.01e-161 456.0
Vivi18g00483 . 42 301 Core Cell Cycle gene family AT5G65420 52.19 6.50e-90 270.0
Vivi18g00655 . 72 321 Core Cell Cycle gene family AT4G37630 37.405 1.64e-47 160.0
Vivi18g00668 . 12 304 Core Cell Cycle gene family AT1G76540 29.45 6.39e-43 149.0
Vivi18g00693 . 1 353 Core Cell Cycle gene family AT5G43080 63.288 1.36e-166 468.0
Vivi18g00719 . 1 282 Core Cell Cycle gene family AT4G34160 55.631 7.54e-102 304.0
Vivi18g01101 . 1 430 Core Cell Cycle gene family AT1G76310 65.766 0.0 563.0
Vivi1g01152 . 4 305 Core Cell Cycle gene family AT1G18040 33.333 2.27e-49 177.0
Vivi7g00253 . 30 499 Core Cell Cycle gene family AT1G02970 62.208 0.0 587.0
Vivi7g00249 . 220 347 Core Cell Cycle gene family AT1G02970 46.324 3.25e-29 110.0
Vivi14g01589 . 18 358 Core Cell Cycle gene family AT5G10270 44.565 2.83e-101 319.0
Vivi1g00524 . 204 397 Core Cell Cycle gene family AT5G11300 33.333 1.92e-24 104.0
Vivi1g00261 . 8 302 Core Cell Cycle gene family AT3G54180 26.946 7.14e-15 73.6
Vivi18g00035 . 11 307 Core Cell Cycle gene family AT1G76540 83.442 0.0 545.0
Vivi5g01148 . 31 357 Core Cell Cycle gene family AT5G10270 52.134 1.95e-109 329.0
Vivi19g00220 . 18 369 Core Cell Cycle gene family AT5G10270 53.258 1.07e-120 369.0
Vivi11g00315 . 122 478 Core Cell Cycle gene family AT4G28980 56.825 2.74e-136 397.0
Vivi9g00421 . 1 459 Core Cell Cycle gene family AT1G80370 54.361 6.86e-174 495.0
Vivi5g00361 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 1.61e-120 363.0
Vivi4g00866 . 241 357 Core Cell Cycle gene family AT5G10270 48.718 1.93e-28 108.0
Vivi1g00779 . 12 339 Core Cell Cycle gene family AT1G70210 65.361 3.06e-147 416.0
Vivi19g01087 . 48 244 Core Cell Cycle gene family AT5G27620 24.454 7.11e-07 49.7
Vivi12g00141 . 10 278 Core Cell Cycle gene family AT3G48750 35.842 3.16e-53 176.0
Vivi5g00892 . 5 220 Core Cell Cycle gene family AT5G48820 42.982 1.03e-45 149.0
Vivi10g00435 . 185 358 Core Cell Cycle gene family AT5G10270 47.701 1.42e-42 152.0
Vivi14g00419 . 18 363 Core Cell Cycle gene family AT5G10270 50.432 6.06e-117 355.0
Vivi7g01084 . 83 195 Core Cell Cycle gene family AT1G49620 42.241 5.17e-20 82.0
Vivi7g01187 . 21 365 Core Cell Cycle gene family AT5G10270 44.693 1.99e-94 298.0
Vivi7g01265 . 18 470 Core Cell Cycle gene family AT5G63610 77.489 0.0 718.0
Vivi2g00880 . 10 295 Core Cell Cycle gene family AT1G66750 37.931 4.89e-68 219.0
Vivi12g01180 . 18 441 Core Cell Cycle gene family AT5G10270 44.7 6.66e-115 354.0
Vivi12g01167 . 20 312 Core Cell Cycle gene family AT1G76540 34.915 3.26e-57 189.0
Vivi3g00202 . 2 430 Core Cell Cycle gene family AT1G76310 59.725 2.62e-176 498.0
Vivi8g00630 . 14 304 Core Cell Cycle gene family AT1G76540 26.901 7.65e-31 119.0
Vivi8g00490 . 1 436 Core Cell Cycle gene family AT5G06150 56.114 3.94e-171 486.0
Vivi15g00123 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 543.0
Vivi15g00563 . 20 313 Core Cell Cycle gene family AT1G76540 35.811 3.94e-56 187.0
Vivi7g00448 . 20 312 Core Cell Cycle gene family AT1G76540 34.915 1.18e-56 186.0
Vivi7g00754 . 1 222 Core Cell Cycle gene family AT5G48820 52.632 4.35e-64 196.0
Vivi8g00018 . 7 309 Core Cell Cycle gene family AT3G54180 83.828 0.0 528.0
Vivi14g00835 . 10 341 Core Cell Cycle gene family AT1G66750 76.807 0.0 544.0
Vivi14g00219 . 1 332 Core Cell Cycle gene family AT5G27620 65.868 1.37e-163 458.0
Vivi6g01113 . 1 80 Core Cell Cycle gene family AT2G27970 90.244 1.68e-51 154.0
Vivi3g00435 . 83 193 Core Cell Cycle gene family AT1G49620 46.018 2.26e-22 89.0
Vivi14g01337 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 4.40e-56 185.0
Vivi13g00075 . 1 437 Core Cell Cycle gene family AT5G06150 56.317 1.77e-161 462.0
Vivi14g01069 . 361 950 Core Cell Cycle gene family AT3G12280 54.866 0.0 600.0
Vivi8g00767 . 1 323 Core Cell Cycle gene family AT5G02110 33.333 1.61e-46 159.0
Vivi9g00786 . 302 436 Core Cell Cycle gene family AT4G28980 29.63 5.17e-14 67.0
Vivi18g01343 . 21 355 Core Cell Cycle gene family AT5G10270 46.726 3.04e-96 296.0
Vivi4g00728 . 31 357 Core Cell Cycle gene family AT5G10270 52.134 4.90e-107 325.0
Vivi4g00234 . 16 1013 Core Cell Cycle gene family AT3G12280 69.565 0.0 1387.0
Vivi4g00364 . 3 303 Core Cell Cycle gene family AT3G54180 28.613 1.78e-29 114.0
Vivi4g00368 . 86 434 Core Cell Cycle gene family AT5G11300 57.431 1.89e-151 434.0
Vivi19g01155 . 23 647 Core Cell Cycle gene family AT1G16330 44.113 1.84e-168 493.0
Vivi6g00928 . 1 436 Core Cell Cycle gene family AT5G06150 50.79 9.85e-139 404.0
Vivi6g00904 . 1 505 Core Cell Cycle gene family AT5G10270 73.228 0.0 723.0
Vivi3g00725 . 22 283 Core Cell Cycle gene family AT1G70210 41.696 4.54e-63 202.0
Vivi3g00655 . 1 363 Core Cell Cycle gene family AT1G47230 46.631 8.21e-104 307.0
Vivi5g01288 . 67 161 Core Cell Cycle gene family AT3G50070 53.684 1.08e-26 108.0