AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01156 ATGGATTCTTCAACAATGCTGTACAACCAGCTCAAGTCATCAGAACCCTTTTTCTTGTTGGCTGGTCCCAATGTGATTGAATCTGAGGAGCACATTATGTATATGGCCAAAGCCATCAAGAGTCTCACATCAAAATTTGGGTTGAAGCTGGTTTTCAAGTCGAGCTTTGATAAAGCCAATCGAACCTCCTCAAAATCATTTCGGGGTCCTGGCATGATTGAAGGCCTGAAGATCCTTGAGAAGGTCAAAGTAGCATATGACATCCCCATAGTGACTGATGTACATGAAATTGAACAGTGTGAACCAGTTGGCAGAGTTGCAGACATCATTCAGATTCCAGCTTTCCTCTGTCGTCAGACAGATCTCCTAGTCGCTGCTGCCAAGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCTGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATAATGATCTGATTGTTGATCCACGCAACTTGGAGTGGATGAGGGAAGCTAATTGTCCTATTGTGGCAGATGTCACACATTCACTACAACAGCCTGCGGGGAGAAAACTGGAAGGCGGAGGTGTTGCCAGTGGAGGTCTTCGTGAATTGATACCATGCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCACACCAGTCCATGATTAA 873 45.13 MDSSTMLYNQLKSSEPFFLLAGPNVIESEEHIMYMAKAIKSLTSKFGLKLVFKSSFDKANRTSSKSFRGPGMIEGLKILEKVKVAYDIPIVTDVHEIEQCEPVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMVNSAEKIRLAGNENVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADVTHSLQQPAGRKLEGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHNDPLNAPVDGPTQWPLRHLEELLEELVAIARVSKGKQRFNIDLTPVHD* 291
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01156 290 Pfam DAHP synthetase I family 15 267 IPR006218 GO:0009058(InterPro)
Vivi19g01156 290 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1 289 IPR006269 GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0008676(PANTHER)|GO:0008676(InterPro)|GO:0046364(PANTHER)
Vivi19g01156 290 SUPERFAMILY Aldolase 12 277 - -
Vivi19g01156 290 NCBIfam 3-deoxy-8-phosphooctulonate synthase 16 276 IPR006269 GO:0005737(InterPro)|GO:0008676(InterPro)
Vivi19g01156 290 Gene3D Aldolase class I 5 284 IPR013785 -
Vivi19g01156 290 Hamap 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 11 278 IPR006269 GO:0005737(InterPro)|GO:0008676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01156 K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]