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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01159 ATGGTGGACACTTTCGCGACGGGGTATTATAAGAGGCAGCACTTCAGCAAGCCTAAACAAGTGACTGCCGATGAGGAGAGGGGTCAGGAGCATGCAGGGCATGTGCATGTCCACACACATGCCACACATGGCCATGCCCATGGCTCGGCCAGCCCCTCCGATGAGGAAAGCCTCTCCGACCTCATCAGACGCAGAATCGTCTCGCAAGTTTTGGAACTGGGAATTGTGGTTCATTCGGTGATAATTGGAGTCTCCTTAGGCGCCTCTCAAAGGCCAGAAACCATCAAGCCTCTCCTAGCAGCCCTGTCTTTCCATCAGTTTTTCGAGGGGCTGGGGCTTGGGGGCTGCATATCTCAGGCCAAATTCAGGTTCTCAACTATGGCCATGATGGTTCTTTTCTTCTCCGTCACAACCCCAGTGGGAATAGTGCTAGGCATTGGAATATCAAGAATTTACCACGAAAATGGCCCAACTGCACTCATAGTTGAAGGGGTATTTGACGCGGCATCGGCTGGGATCTTGATATACATGGCGCTGGTGGATCTTCTAGCGGCGGACTTCATGAACCCGAGGCTACAGAACAGCCTGAGGCTCCAGTTAGGGGCAAATATCTCCCTTCTTTTAGGGACTGGCTGCATGTCTTTCTTGGCCAAATGGGCTTGA 663 52.34 MVDTFATGYYKRQHFSKPKQVTADEERGQEHAGHVHVHTHATHGHAHGSASPSDEESLSDLIRRRIVSQVLELGIVVHSVIIGVSLGASQRPETIKPLLAALSFHQFFEGLGLGGCISQAKFRFSTMAMMVLFFSVTTPVGIVLGIGISRIYHENGPTALIVEGVFDAASAGILIYMALVDLLAADFMNPRLQNSLRLQLGANISLLLGTGCMSFLAKWA* 221
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01159 220 PANTHER ZINC-IRON TRANSPORTER 1 219 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Vivi19g01159 220 NCBIfam ZIP zinc-iron transport family 1 220 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Vivi19g01159 220 Pfam ZIP Zinc transporter 2 217 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01159 K14709 solute carrier family 39 (zinc transporter), member 1/2/3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:23194272 Vivi1g00111 Vivi-Chr1:1086665 dispersed
Vivi Vivi-Chr19:23194272 Vivi19g01162 Vivi-Chr19:23237784 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g00975 . 66 503 InOrganic Solute Cotransporters gene family gene family AT2G23150 74.715 0.0 657.0
Vivi7g00064 . 10 638 InOrganic Solute Cotransporters gene family gene family AT4G02700 67.568 0.0 858.0
Vivi7g00062 . 10 638 InOrganic Solute Cotransporters gene family gene family AT4G02700 71.701 0.0 924.0
Vivi17g00164 . 11 788 InOrganic Solute Cotransporters gene family gene family AT2G40540 48.575 0.0 747.0
Vivi18g00232 . 31 518 InOrganic Solute Cotransporters gene family gene family AT1G15960 60.714 0.0 619.0
Vivi18g00233 . 200 326 InOrganic Solute Cotransporters gene family gene family AT1G15960 63.78 1.08e-47 161.0
Vivi18g00234 . 30 509 InOrganic Solute Cotransporters gene family gene family AT1G80830 61.728 0.0 616.0
Vivi18g00368 . 45 672 InOrganic Solute Cotransporters gene family gene family AT5G10180 68.196 0.0 872.0
Vivi18g00369 . 9 656 InOrganic Solute Cotransporters gene family gene family AT1G22150 78.858 0.0 1027.0
Vivi18g00371 . 379 606 InOrganic Solute Cotransporters gene family gene family AT1G78000 78.07 2.26e-112 337.0
Vivi18g00684 . 78 508 InOrganic Solute Cotransporters gene family gene family AT1G47240 77.726 0.0 672.0
Vivi7g00252 . 8 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 53.807 0.0 841.0
Vivi7g00251 . 14 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 54.113 0.0 841.0
Vivi7g00250 . 8 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 54.188 0.0 850.0
Vivi7g00246 . 16 126 InOrganic Solute Cotransporters gene family gene family AT4G13420 53.043 1.28e-32 121.0
Vivi7g00245 . 14 648 InOrganic Solute Cotransporters gene family gene family AT4G13420 59.75 0.0 788.0
Vivi7g00244 . 80 211 InOrganic Solute Cotransporters gene family gene family AT4G13420 65.909 1.97e-54 181.0
Vivi1g00568 . 72 705 InOrganic Solute Cotransporters gene family gene family AT2G30070 40.409 1.45e-168 496.0
Vivi1g00431 . 1 622 InOrganic Solute Cotransporters gene family gene family AT1G23090 77.44 0.0 993.0
Vivi1g00262 . 2 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 62.038 0.0 1010.0
Vivi1g00111 . 41 355 InOrganic Solute Cotransporters gene family gene family AT3G12750 58.75 1.68e-124 367.0
Vivi3g00936 . 34 145 InOrganic Solute Cotransporters gene family gene family AT3G46900 29.752 1.73e-13 62.8
Vivi3g00938 . 34 145 InOrganic Solute Cotransporters gene family gene family AT3G46900 27.273 6.56e-12 58.2
Vivi19g00222 . 11 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 51.657 3.38e-121 352.0
Vivi19g00641 . 94 326 InOrganic Solute Cotransporters gene family gene family AT1G55910 60.837 8.04e-109 315.0
Vivi19g00643 . 94 326 InOrganic Solute Cotransporters gene family gene family AT1G55910 61.154 5.11e-108 313.0
Vivi19g00645 . 94 172 InOrganic Solute Cotransporters gene family gene family AT1G55910 40.964 7.81e-16 68.9
Vivi19g00647 . 39 326 InOrganic Solute Cotransporters gene family gene family AT1G55910 62.54 7.83e-138 392.0
Vivi19g00861 . 1 71 InOrganic Solute Cotransporters gene family gene family AT2G30070 67.123 3.14e-25 95.1
Vivi11g00067 . 1 146 InOrganic Solute Cotransporters gene family gene family AT5G20650 52.027 5.56e-53 162.0
Vivi11g00363 . 24 649 InOrganic Solute Cotransporters gene family gene family AT3G15990 75.399 0.0 988.0
Vivi11g00364 . 17 627 InOrganic Solute Cotransporters gene family gene family AT5G19600 67.528 0.0 852.0
Vivi11g00365 . 1 634 InOrganic Solute Cotransporters gene family gene family AT5G19600 63.707 0.0 814.0
Vivi3g01088 . 200 360 InOrganic Solute Cotransporters gene family gene family AT1G05300 68.944 2.08e-76 230.0
Vivi3g01089 . 4 339 InOrganic Solute Cotransporters gene family gene family AT2G32270 52.819 5.34e-118 342.0
Vivi13g00225 . 20 676 InOrganic Solute Cotransporters gene family gene family AT3G12520 71.576 0.0 962.0
Vivi9g00387 . 24 653 InOrganic Solute Cotransporters gene family gene family AT3G15990 78.254 0.0 1034.0
Vivi9g00454 . 227 460 InOrganic Solute Cotransporters gene family gene family AT1G80310 70.763 9.71e-107 313.0
Vivi5g00545 . 7 639 InOrganic Solute Cotransporters gene family gene family AT4G02700 65.881 0.0 860.0
Vivi5g00546 . 1 638 InOrganic Solute Cotransporters gene family gene family AT4G02700 64.263 0.0 837.0
Vivi2g00066 . 2 775 InOrganic Solute Cotransporters gene family gene family AT4G23640 61.125 0.0 988.0
Vivi2g00269 . 44 369 InOrganic Solute Cotransporters gene family gene family AT3G58810 64.223 1.11e-135 391.0
Vivi1g00742 . 70 827 InOrganic Solute Cotransporters gene family gene family AT1G60160 77.968 0.0 1211.0
Vivi19g01097 . 56 712 InOrganic Solute Cotransporters gene family gene family AT2G30070 57.206 0.0 814.0
Vivi5g00910 . 301 370 InOrganic Solute Cotransporters gene family gene family AT1G47240 66.667 1.10e-20 89.4
Vivi10g00250 . 444 591 InOrganic Solute Cotransporters gene family gene family AT3G26570 24.837 2.85e-14 73.6
Vivi10g00519 . 327 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 85.168 0.0 1148.0
Vivi7g01094 . 46 677 InOrganic Solute Cotransporters gene family gene family AT5G10180 70.095 0.0 914.0
Vivi6g00659 . 1 341 InOrganic Solute Cotransporters gene family gene family AT2G30080 67.529 3.03e-164 459.0
Vivi6g00654 . 1 623 InOrganic Solute Cotransporters gene family gene family AT2G30070 76.8 0.0 1015.0
Vivi6g00547 . 45 168 InOrganic Solute Cotransporters gene family gene family AT5G59030 57.48 2.82e-47 148.0
Vivi6g00546 . 45 164 InOrganic Solute Cotransporters gene family gene family AT5G59030 58.065 3.47e-43 139.0
Vivi6g00544 . 45 168 InOrganic Solute Cotransporters gene family gene family AT5G59030 55.118 4.31e-46 146.0
Vivi6g00529 . 1 373 InOrganic Solute Cotransporters gene family gene family AT2G29410 47.23 1.83e-121 353.0
Vivi6g00480 . 4 353 InOrganic Solute Cotransporters gene family gene family AT5G59520 59.714 5.56e-138 395.0
Vivi10g00748 . 30 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 53.571 3.49e-120 349.0
Vivi10g00749 . 13 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 67.614 8.06e-166 465.0
Vivi10g00750 . 251 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 77.193 6.68e-58 181.0
Vivi15g00929 . 582 1188 InOrganic Solute Cotransporters gene family gene family AT1G01790 90.789 0.0 1036.0
Vivi15g00609 . 1 67 InOrganic Solute Cotransporters gene family gene family AT2G46800 55.224 3.77e-18 75.9
Vivi12g00852 . 20 654 InOrganic Solute Cotransporters gene family gene family AT1G22150 74.057 0.0 953.0
Vivi8g00092 . 1 504 InOrganic Solute Cotransporters gene family gene family AT2G01280 41.754 5.59e-113 347.0
Vivi13g00146 . 1 794 InOrganic Solute Cotransporters gene family gene family AT2G40540 79.349 0.0 1275.0
Vivi13g00073 . 16 340 InOrganic Solute Cotransporters gene family gene family AT2G30080 46.988 1.16e-99 306.0
Vivi9g00780 . 6 519 InOrganic Solute Cotransporters gene family gene family AT1G15960 79.619 0.0 858.0
Vivi4g00102 . 6 408 InOrganic Solute Cotransporters gene family gene family AT1G10970 60.442 2.03e-163 461.0
Vivi4g00175 . 1 99 InOrganic Solute Cotransporters gene family gene family AT5G20650 54.0 3.65e-29 106.0
Vivi4g00387 . 1 325 InOrganic Solute Cotransporters gene family gene family AT2G25680 58.282 1.29e-128 373.0
Vivi19g01162 . 270 351 InOrganic Solute Cotransporters gene family gene family AT1G05300 67.073 7.91e-31 113.0
Vivi19g01159 . 141 355 InOrganic Solute Cotransporters gene family gene family AT3G12750 64.317 1.24e-94 279.0