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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01161 ATGGGAATCGAACCTCCATCTCCATATGAAATAAAGAATAAGTACTTGGAAATGGAGTACAAAGATATGGAAGATTATGTGAACCAGCAAAGAGAAAAATGGAAGATATATGGTTGCACCATAATGTCAGATGGATGGACAGGGCCCACGAGATTAAGCATAATTAATTTCATGGCTTATTCAAAAGGGAGTACGGTGTTCCTCAAGTTAGTCGATGCGTCCAACAATATCAAAGACCACAAATACATATACAAGCAATTGAAGAATGTTATAAAAAAAGTCAGGGTAGATGATGTGGTCCAAATTGTCACAGATAACGGGTCAGCGTTCGTGAAAGCAGGGAAGCTGTTGATGAAAAAGTTTAACTTATATTGGACCCCATGTGCGGCATACTGCATCGACTTAATGCTTGAAGACATTAGGAAAAGACCTAGTACTGCAGAGGTAATACGCAATGCCCGCAAGATAACTAACTTCATTTACAATCATTGTTGGTTACTTGCAGAAATGAGAAAGTATTGTGGTGGAGACATTGTTCGACCAGGAGCTACAAGGTTTGCTACAAACTATATTGCTCTTGAAAGTCTTTTTTAA 594 38.38 MGIEPPSPYEIKNKYLEMEYKDMEDYVNQQREKWKIYGCTIMSDGWTGPTRLSIINFMAYSKGSTVFLKLVDASNNIKDHKYIYKQLKNVIKKVRVDDVVQIVTDNGSAFVKAGKLLMKKFNLYWTPCAAYCIDLMLEDIRKRPSTAEVIRNARKITNFIYNHCWLLAEMRKYCGGDIVRPGATRFATNYIALESLF* 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01161 197 PANTHER OSJNBA0013A04.12 PROTEIN 2 196 - -
Vivi19g01161 197 Pfam Protein of unknown function (DUF 659) 6 156 IPR007021 -
Vivi19g01161 197 SUPERFAMILY Ribonuclease H-like 30 196 IPR012337 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01161 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:23215254 Vivi3g00846 Vivi-Chr3:10239520 dispersed
Vivi Vivi-Chr19:23215254 Vivi13g01199 Vivi-Chr13:23425164 transposed