AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01165 | ATGGTGTGTGGTATCTGTCATTTTCCCTCGGCCCCGGAGGACTGTGAAATCTTTCTCTCTGCTATTCTTTTCTGCACACTTGGTAAAACGACAGCAATGGCCCTCTACAGCTCCAACAGTCTTCTTCTTCTTCTTCACCACAAACCCAAGAGCAGCTGCGTCACTGCACCCATATCAGCTTCTCTTAGTCCTGGACTAAAGACTTGGACAGAAGGCAATCATGTTGGTCTGGGCTTTGAAGGGACCAAGGAAAGAATCAAGAAGATGTTTGACAAGGTTGAGCTTTCGGTATCTTCATATGACACAGCTTGGGTTGCTATGGTCCCTTCTCCATATTCCTCACAGGCCCCATACTTCCCGGAGTGTGTGAATTGGTTATTGGAAAATCAGTCTCATGATGGCTCATGGGGTCTTCCTCATCCCCATCCCATGTTAGTCAAAGATGCTCTTTCATCTACTTTGGCATCTGTCCTTGCACTCAAGCGATGGGGTGTTGGTGAAGAGCAAAGGAACAAGGGGCTCTGGTTTATTGCATCCAATTTTGCTTCAGTTAGCGATGAGAAACAACATTCTCCAATTGGATTCGATATAATATTTCCTGGTATGATTGAGTATGCCAAAGAATTAGATTTGAACCTCCCTTTGGGGCAAAGAGATGTAGATGCTATGCTTCAGAAGAGGGATTTGGAGCTCAAAGGAAGCTTGGGAAGCAACACTAAGAGCAGAGAAGCCTACTTAGCATATATTTCGGAAGGAATGGGAAGGTTACAAGACTGGGAAATGGTTATGAAATATCAGATGAAGAATGGGTCTCTGCTCAATTCACCTTCTGCCACAGCAGCTGCTCTTTCTCACCTTCAAAATGCGGGTTGTCTGAATTACCTTCGATCTCTTTTAGAGAAGTTTGGGAATGCAGTCCCAACAGTGTATCCTCTAGATTTATATGCTCGTTTATGTTTGGTTGACAATCTTGAAAGGTTGGGAATTGATCGGTATTTTAGGATGGAGATCAGAAGTGTATTGGATGAAACATACAGATGCTGGCTGCAGAGGGAGGAAGAGATATTTGCAGACAGAGCCACCTGTGCAATCGCATTTCGGATACTACGTTTAAATGGATATGACATCTCTTCAGTTCCATTAGCTCAATTTGCTGAAGACGATCAGTATTTCAAGTTTGGACAAGATTTTAAGGACTTGGGGGCTGCCCTTGAATTATTTAGGGCTTCAGAGATGATTATACACCCAGATGAAGTGGTTCTGGAGAAACAAAACTCATGGTCAAGTCATTTTCTAAGACAGGGACTATCGAACAGTTCAATTCATGCAGATAGACTCAATAAGTACATTGCCCAAGAGGTGGAGGATGCTCTTAGGTTTCCCTACTACGCAAATTTGGATCGCATAGCAAACAGAAGAAGTATTGAGCATTATAATGTAGATGATACAAGGATATTAAAAACTGCATATCGCTCTTCACATGTCTGCAACAAAGATTTCCTAAAACTAGCAGTTGAAGACTTCAATTTCTGTCAATCAATACACCAAAACGAACTCAAACAACTTGAGAGGTGGATTATAGAGAACAGATTAGACAAGCTAAAGTTTGCGAGGCAGAAGCTGGCCTACTGTTACTTCTCTGCTGCAGCAACCATATTCTCTCCTGAACAATCTGATGCCCGCCTTTCGTGGGCCAAAAACAGTGTTCTCACAACTGTGGTTGATGACTTCTTTGACATTGGAGGCTCTGAAGAGGAGCTCCTAAACCTTATTCAACTGGTTGAGAAGTGGGATATAGATGTAGCCGTGGATTGTTGTTCTGAACAAGTTGAGATCGTTTTTTCAGCACTCCACAGCACAATATCTGAGATTGGAGTCAAAGCATCAGCATGGCAAGCCCGTAACGTGACCAGCCATATAATTGATATCTGGCTGAAGTTGCTAAGATCTATGTTACAAGAAGCTCAGTGGGTGAGTAATAAATCAGCTCCAACAATGGATGAATACATGACAAATGCATATGTATCCTTTGCTCTGGGACCAATTGTCCTCCCGGCGCTCTATTTTGTTGGTCCTAAGCTTTCAGAGGAGGTTGTTGAGGGACCTGAGTGCCATAAACTATATAAGCTTATGAGCACCTGTGGGCGTCTTTTGAATGATATCCACAGCTTTAAGAGGGAGTCCAAGGAAGGGAAAGCGAATGCTCTAGCACTACACATGATACATGGCAATGGTGTCACTACTGAAGAACAGGCCATCAGAGAGATGAAGGGTTTAGTTAAGAGTCAGAGGAGAGAACTTCAGAGATTAGTTCTACAGGAGAAGGGTAGCACAGTACCAAGAATTTGCAAGGATTTATTTTGGAAAATGAGCAAAGTGTTGCACACATTTTATGAGAAAGACGATGGATTCACTTCACATGACATGCTCCGTGCTGTGAAATCAGTCATTTATGAACCTGTTCTTCTTGCTGAATTCTAA | 2481 | 42.77 | MVCGICHFPSAPEDCEIFLSAILFCTLGKTTAMALYSSNSLLLLLHHKPKSSCVTAPISASLSPGLKTWTEGNHVGLGFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPYSSQAPYFPECVNWLLENQSHDGSWGLPHPHPMLVKDALSSTLASVLALKRWGVGEEQRNKGLWFIASNFASVSDEKQHSPIGFDIIFPGMIEYAKELDLNLPLGQRDVDAMLQKRDLELKGSLGSNTKSREAYLAYISEGMGRLQDWEMVMKYQMKNGSLLNSPSATAAALSHLQNAGCLNYLRSLLEKFGNAVPTVYPLDLYARLCLVDNLERLGIDRYFRMEIRSVLDETYRCWLQREEEIFADRATCAIAFRILRLNGYDISSVPLAQFAEDDQYFKFGQDFKDLGAALELFRASEMIIHPDEVVLEKQNSWSSHFLRQGLSNSSIHADRLNKYIAQEVEDALRFPYYANLDRIANRRSIEHYNVDDTRILKTAYRSSHVCNKDFLKLAVEDFNFCQSIHQNELKQLERWIIENRLDKLKFARQKLAYCYFSAAATIFSPEQSDARLSWAKNSVLTTVVDDFFDIGGSEEELLNLIQLVEKWDIDVAVDCCSEQVEIVFSALHSTISEIGVKASAWQARNVTSHIIDIWLKLLRSMLQEAQWVSNKSAPTMDEYMTNAYVSFALGPIVLPALYFVGPKLSEEVVEGPECHKLYKLMSTCGRLLNDIHSFKRESKEGKANALALHMIHGNGVTTEEQAIREMKGLVKSQRRELQRLVLQEKGSTVPRICKDLFWKMSKVLHTFYEKDDGFTSHDMLRAVKSVIYEPVLLAEF* | 827 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01165 | 826 | SFLD | Terpene Cyclase Like 1 N-term | 80 | 492 | - | - | |
| Vivi19g01165 | 826 | SUPERFAMILY | Terpenoid cyclases-Protein prenyltransferases | 99 | 294 | IPR008930 | - | |
| Vivi19g01165 | 826 | SUPERFAMILY | Terpenoid cyclases-Protein prenyltransferases | 268 | 482 | IPR008930 | - | |
| Vivi19g01165 | 826 | Coils | Coil | 753 | 773 | - | - | |
| Vivi19g01165 | 826 | Pfam | Terpene synthase, N-terminal domain | 258 | 458 | IPR001906 | GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Vivi19g01165 | 826 | SUPERFAMILY | Terpenoid synthases | 497 | 821 | IPR008949 | - | |
| Vivi19g01165 | 826 | Gene3D | - | 88 | 508 | IPR036965 | GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Vivi19g01165 | 826 | FunFam | cis-abienol synthase, chloroplastic | 96 | 299 | - | - | |
| Vivi19g01165 | 826 | FunFam | Ent-kaur-16-ene synthase, chloroplastic | 511 | 823 | - | - | |
| Vivi19g01165 | 826 | PANTHER | ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC | 82 | 820 | IPR050148 | GO:0000287(PANTHER)|GO:0009507(PANTHER)|GO:0009686(PANTHER)|GO:0010333(PANTHER)|GO:0016102(PANTHER) | |
| Vivi19g01165 | 826 | Gene3D | Farnesyl Diphosphate Synthase | 511 | 825 | IPR008949 | - | |
| Vivi19g01165 | 826 | SFLD | Isoprenoid Synthase Type I | 497 | 821 | - | - | |
| Vivi19g01165 | 826 | Pfam | Terpene synthase family, metal binding domain | 530 | 765 | IPR005630 | GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Vivi19g01165 | 826 | Gene3D | - | 96 | 299 | - | - | |
| Vivi19g01165 | 826 | SFLD | Terpene Cyclase Like 1 C Terminal Domain | 497 | 821 | IPR034741 | - | |
| Vivi19g01165 | 826 | CDD | Terpene-cyclase-plant-C1 | 308 | 820 | IPR044814 | GO:0010333(InterPro)|GO:0016102(InterPro) | |
| Vivi19g01165 | 826 | FunFam | Ent-copalyl diphosphate synthase, chloroplastic | 291 | 508 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01165 | K04121 | ent-kaurene synthase [EC:4.2.3.19] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr19:23284514 | Vivi7g00100 | Vivi-Chr7:1223757 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi12g00563 | . | 13 | 409 | TPS gene family | AT3G25820 | 39.372 | 4.49e-97 | 301.0 | |
| Vivi12g00564 | . | 395 | 598 | TPS gene family | AT3G25820 | 46.078 | 1.71e-59 | 194.0 | |
| Vivi12g00565 | . | 34 | 170 | TPS gene family | AT3G25820 | 34.247 | 2.95e-20 | 84.7 | |
| Vivi12g00568 | . | 257 | 537 | TPS gene family | AT4G16730 | 38.542 | 8.71e-71 | 226.0 | |
| Vivi12g00572 | . | 257 | 537 | TPS gene family | AT4G16730 | 39.161 | 3.45e-72 | 229.0 | |
| Vivi7g00102 | . | 88 | 802 | TPS gene family | AT4G02780 | 54.036 | 0.0 | 758.0 | |
| Vivi7g00100 | . | 32 | 802 | TPS gene family | AT4G02780 | 54.931 | 0.0 | 841.0 | |
| Vivi19g00095 | . | 4 | 547 | TPS gene family | AT5G23960 | 40.11 | 7.13e-146 | 429.0 | |
| Vivi19g00096 | . | 5 | 547 | TPS gene family | AT5G23960 | 42.202 | 9.26e-158 | 460.0 | |
| Vivi19g00208 | . | 4 | 547 | TPS gene family | AT5G23960 | 40.659 | 1.24e-148 | 438.0 | |
| Vivi19g00209 | . | 31 | 547 | TPS gene family | AT5G23960 | 38.536 | 4.48e-122 | 373.0 | |
| Vivi19g00210 | . | 4 | 547 | TPS gene family | AT5G23960 | 42.077 | 3.41e-154 | 451.0 | |
| Vivi19g00396 | . | 1 | 547 | TPS gene family | AT5G23960 | 41.712 | 3.57e-154 | 452.0 | |
| Vivi19g00397 | . | 1 | 547 | TPS gene family | AT5G23960 | 42.077 | 4.89e-155 | 453.0 | |
| Vivi19g00399 | . | 358 | 432 | TPS gene family | AT1G70080 | 40.0 | 2.45e-19 | 78.6 | |
| Vivi19g00400 | . | 415 | 547 | TPS gene family | AT5G23960 | 44.03 | 2.36e-35 | 127.0 | |
| Vivi19g00402 | . | 181 | 547 | TPS gene family | AT5G23960 | 42.391 | 5.73e-103 | 312.0 | |
| Vivi19g00403 | . | 1 | 518 | TPS gene family | AT5G23960 | 41.426 | 1.93e-142 | 427.0 | |
| Vivi19g00404 | . | 1 | 547 | TPS gene family | AT5G23960 | 41.894 | 1.77e-154 | 451.0 | |
| Vivi19g00814 | . | 468 | 547 | TPS gene family | AT3G29190 | 47.5 | 1.42e-17 | 73.6 | |
| Vivi12g00555 | . | 16 | 385 | TPS gene family | AT4G16740 | 41.333 | 3.27e-91 | 288.0 | |
| Vivi12g00556 | . | 16 | 344 | TPS gene family | AT4G16740 | 41.018 | 7.98e-79 | 251.0 | |
| Vivi8g01299 | . | 16 | 267 | TPS gene family | AT4G16740 | 40.0 | 5.28e-49 | 169.0 | |
| Vivi19g01165 | . | 6 | 781 | TPS gene family | AT1G79460 | 58.28 | 0.0 | 911.0 |