AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g01170 | ATGGGTCTGTTGCGGAGCAGCTGCTCAGCGCTGTGTCACGGCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTACTTCGGAGCCAGTGCCTTATTGGAGGAAAATGGACTGAAGCTTATGATGGGAAGACCATACCGGTCCACAACCCTGCTACTGGTGATGTTTTAGTAAATGTTCCATGCATGGGAGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATGATCACACGGAAGGTTGGTCCTGCCCTTGCTTGTGGCTGCACAGTGGTTATAAAACCTTCTGAACTTACACCATTGACAGCCTTAGCAGCAGCTGAGCTTGCCCTTCAAGCTGGAATACCACCGGGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATGGCTGGTGCAGCTCAGACTGTTAAAAAGGTATCTCTGGAACTTGGTGGTAATGCACCTTGCATAATCTTTGACGATGCAGACCTGGAGGTGGCAGTAAAAGGGGCTCTTGGTACAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATACTTGTGCAGGAAGGTATTTATGAGAAATTTGCAATTGCTTTTTCACAAGCTGTCCAAAGTATGCAAGTTGGTGAAGGTTTTACTGAAGGTGTGGTCCAGGGTCCACTGATTAATGAGGCTGCAGTGCAGAAGGTTGAATCATTTGTTAAAGATGCTGTCTCAAAGGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCACTGAAGCCCTTGAATATGGACTGGTTGGTGTCAATGAAGGATTGGTTTCAACAGAGGTGGCTCCATTTGGAGGAGTCAAGGAGTCTGGTCTTGGTAGGGAAGGTTCCAAATATGGGATGGATGAATTTCTGGAAATGAAATATGTGTGCTTCGGAAATATAAGCAGTAACTGA | 1578 | 46.13 | MGLLRSSCSALCHGPRTASVLRPSAVLTRQISMDTQNLVARLNSSGLLRSQCLIGGKWTEAYDGKTIPVHNPATGDVLVNVPCMGGQETNDAISVAYEAFLSWSKLTAAERSKRLRKWYDLLIANKEELGQIITLEQGKPLKEAIGEVNYGAAFIEFSAEEAKRIYGDIIPSPLADRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQAGIPPGAVNVVFGNAPEIGDALLASRQVRKITFTGSTAVGKKLMAGAAQTVKKVSLELGGNAPCIIFDDADLEVAVKGALGTKFRNSGQTCVCANRILVQEGIYEKFAIAFSQAVQSMQVGEGFTEGVVQGPLINEAAVQKVESFVKDAVSKGAKVLLGGKRHSLGMTFYEPTVIGDIKNDMLIARNEVFGPVAPLLRFKTEEEAIRIANDTNAGLAAYVFTENVQRMWRVTEALEYGLVGVNEGLVSTEVAPFGGVKESGLGREGSKYGMDEFLEMKYVCFGNISSN* | 526 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g01170 | 525 | FunFam | Succinate-semialdehyde dehydrogenase I | 64 | 307 | - | - | |
| Vivi19g01170 | 525 | FunFam | Succinate-semialdehyde dehydrogenase I | 297 | 486 | - | - | |
| Vivi19g01170 | 525 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 297 | 486 | IPR016163 | GO:0016620(InterPro) | |
| Vivi19g01170 | 525 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 64 | 511 | IPR016162 | GO:0016491(InterPro) | |
| Vivi19g01170 | 525 | Pfam | Aldehyde dehydrogenase family | 58 | 517 | IPR015590 | GO:0016491(InterPro) | |
| Vivi19g01170 | 525 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 42 | 521 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Vivi19g01170 | 525 | NCBIfam | succinate-semialdehyde dehydrogenase | 69 | 515 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Vivi19g01170 | 525 | SUPERFAMILY | ALDH-like | 46 | 521 | IPR016161 | GO:0016491(InterPro) | |
| Vivi19g01170 | 525 | CDD | ALDH-F5-SSADH-GabD | 69 | 519 | - | - | |
| Vivi19g01170 | 525 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 293 | 300 | IPR029510 | GO:0016491(InterPro) | |
| Vivi19g01170 | 525 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 321 | 332 | IPR016160 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g01170 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Vivi19g01170 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr11:787353 | Vivi19g01170 | Vivi-Chr19:23353908 | dispersed | |
| Vivi | Vivi-Chr17:8629208 | Vivi19g01170 | Vivi-Chr19:23353908 | dispersed | |
| Vivi | Vivi-Chr19:23319003 | Vivi19g01170 | Vivi-Chr19:23353908 | dispersed | |
| Vivi | Vivi-Chr19:23353908 | Vivi1g00738 | Vivi-Chr1:8860602 | dispersed | |
| Vivi | Vivi-Chr19:23341372 | Vivi19g01170 | Vivi-Chr19:23353908 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi3g00890 | . | 82 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 82.543 | 0.0 | 910.0 | |
| Vivi3g00891 | . | 82 | 462 | Aldehyde Dehydrogenase gene family | AT2G14170 | 76.903 | 0.0 | 600.0 | |
| Vivi1g00583 | . | 112 | 534 | Aldehyde Dehydrogenase gene family | AT1G23800 | 68.794 | 0.0 | 614.0 | |
| Vivi17g00722 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 79.592 | 0.0 | 912.0 | |
| Vivi17g00685 | . | 3 | 207 | Aldehyde Dehydrogenase gene family | AT1G74920 | 62.927 | 1.70e-81 | 248.0 | |
| Vivi17g00684 | . | 247 | 495 | Aldehyde Dehydrogenase gene family | AT3G48170 | 79.92 | 1.57e-150 | 427.0 | |
| Vivi17g00683 | . | 1 | 503 | Aldehyde Dehydrogenase gene family | AT3G48170 | 80.517 | 0.0 | 869.0 | |
| Vivi17g00517 | . | 23 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 82.397 | 0.0 | 953.0 | |
| Vivi18g00247 | . | 4 | 482 | Aldehyde Dehydrogenase gene family | AT1G44170 | 66.597 | 0.0 | 681.0 | |
| Vivi4g01066 | . | 8 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 65.199 | 0.0 | 671.0 | |
| Vivi1g00738 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 76.623 | 0.0 | 879.0 | |
| Vivi1g00737 | . | 211 | 261 | Aldehyde Dehydrogenase gene family | AT3G48000 | 78.431 | 6.00e-25 | 93.2 | |
| Vivi1g00736 | . | 116 | 534 | Aldehyde Dehydrogenase gene family | AT1G23800 | 75.349 | 0.0 | 687.0 | |
| Vivi7g01259 | . | 50 | 549 | Aldehyde Dehydrogenase gene family | AT4G34240 | 66.931 | 0.0 | 698.0 | |
| Vivi14g00611 | . | 166 | 287 | Aldehyde Dehydrogenase gene family | AT1G74920 | 65.574 | 2.48e-52 | 170.0 | |
| Vivi11g00660 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 88.508 | 0.0 | 936.0 | |
| Vivi6g00195 | . | 6 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.532 | 0.0 | 592.0 | |
| Vivi14g01384 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.465 | 0.0 | 859.0 | |
| Vivi14g01460 | . | 1 | 500 | Aldehyde Dehydrogenase gene family | AT1G74920 | 76.2 | 0.0 | 825.0 | |
| Vivi5g00075 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 83.67 | 0.0 | 968.0 | |
| Vivi4g00512 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 86.29 | 0.0 | 912.0 | |
| Vivi19g01170 | . | 32 | 528 | Aldehyde Dehydrogenase gene family | AT1G79440 | 78.873 | 0.0 | 805.0 | |
| Vivi19g01169 | . | 36 | 527 | Aldehyde Dehydrogenase gene family | AT1G79440 | 70.325 | 0.0 | 704.0 | |
| Vivi19g01168 | . | 23 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 67.323 | 0.0 | 707.0 |