AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01172 ATGGAGGGCCCAGATCCTGAAATGCAAGAAGAAGGAACCAAGAAGGAGAGTTCCTGGGAGGTCATCAGAGAATGGTTCCGCCTGCAGAAGGGTGGCGGCCTTGGGGTTCATGGAAGCAGTAGCTTCTCCCTCTCTTTATATGGAAACATCCCCTCCAAAACCCAAGACTTGAGGCTTCTGCTAGGCGTCCTGGGCTGCCCTCTCGCCCCCATCCCCCTCGCCACTGACCCACTTCACCGTCTCCATATCAAGGACATCCCCATAGAGACGTCGAGTGCCTGTTACATCATACAGCAGTACTTGGCGGCAACGGGGTGTCTGAAGCAAGAGAAGGGGATGAAAAATATGTACACCACGGGGACGATGAAGATGATATGCTGCGAAACGGAGATATCGACGGGGAAGAGTGTGAAGAGCTTGGGGACGAGGAGTGGGGAGAATGGGTGCTTTGTGCTCTGGCAAATGTCTCCCGGAATGTGGTCTCTGGAGCTGGTGGTGGGTTGCAACAAGGTCGTCGCCGGCAGTAACGGCAAGATCGTCTGGCGCCACACCCCTTGGCTCGGCACCCACGCCGCCAAAGGCCCCCACCGCCCTCTCCGGCGCATCATTCAGGGTTTGGATCCAAAGAGCACGGCTAGCCTGTTCGCCAAAGCCCAATGCTTGGGCGAGAAACGGATAGGAGAAGATGACTGCTTTGTCCTAAAGGTGGCGGCCGACCGGGCGGCAGTGATGGAGAGAAATGAAGGCCCTGCAGAGGTGATAAGGCACGTACTATATGGATACTTCAGCCAAAAGAGTGGCCTCCTAATATACCTAGAGGACTCACACCTCACAAGGGTTCAAGCTCCTGGAAATGACACAGTCTACTGGGAGACCACCATAGGAACCAGCCTGTGGGACTACCGGGACGTCGATGGCGTGATGATCGCGCACGAGGGGCGGACCATCGCCACGGTTTTTCGGTTTGGAGAGGTGTCCATGCAGCATAGCAGGACAAGGATGGAGGAGCTGTGGGTGATAGATGATGTAGTGTTCAATGTTCCTGGCCTCTCCTTTGATTACTTCATTCCTCCTGCTGATATTTTTGATGTTGATAACTCACCATGA 1107 54.83 MEGPDPEMQEEGTKKESSWEVIREWFRLQKGGGLGVHGSSSFSLSLYGNIPSKTQDLRLLLGVLGCPLAPIPLATDPLHRLHIKDIPIETSSACYIIQQYLAATGCLKQEKGMKNMYTTGTMKMICCETEISTGKSVKSLGTRSGENGCFVLWQMSPGMWSLELVVGCNKVVAGSNGKIVWRHTPWLGTHAAKGPHRPLRRIIQGLDPKSTASLFAKAQCLGEKRIGEDDCFVLKVAADRAAVMERNEGPAEVIRHVLYGYFSQKSGLLIYLEDSHLTRVQAPGNDTVYWETTIGTSLWDYRDVDGVMIAHEGRTIATVFRFGEVSMQHSRTRMEELWVIDDVVFNVPGLSFDYFIPPADIFDVDNSP* 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01172 368 PANTHER LIPASE 9 361 IPR006873 -
Vivi19g01172 368 Pfam Protein of unknown function (DUF620) 116 358 IPR006873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01172 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr18:7901913 Vivi19g01172 Vivi-Chr19:23399297 dispersed
Vivi Vivi-Chr19:23399297 Vivi8g01318 Vivi-Chr8:20728208 dispersed
Vivi Vivi-Chr19:23399297 Vivi18g00927 Vivi-Chr18:10519590 transposed