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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00001 ATGAGCATCGAACCATTTAATAGGTTGGTGAAGCTTGCAACTAGGGCATTTTATGATGATATAACAACCAAGGGAGACAACCAACCTAAGACTGGGAGGAGCGATAACCGGGGCATTGTTGTAGTGATGCTTGATGCTCTCACAAGAGTAACAAAGCGTCCATCTTTGAGAATCATACACAATGATGCACTCATTAACTCAAGCTTCAAAAGATCTTCAAACTCCCCCTCAATCTCCATTCTCCAAACATTCCACATAGAATCCCCCAAACCCGAAAGAGAAAGAGAAGAATCGTGCCCCTCCCTCGGACATGACTGGTGCAGCAGCCCCCCCTCCCATGCTTGCGACGTGATATATGTTGTGAGGTATAGATTGCATCGTATGAAGAAAAAACTAAAAGATGAACTGGAGGACAAGGACACATCAGGAGTATATATGCTCCACTTGTGGGAAAAGATACAATGCTTTAGATGCACTGCGACTGATATCTATGGAAGATGA 501 43.91 MSIEPFNRLVKLATRAFYDDITTKGDNQPKTGRSDNRGIVVVMLDALTRVTKRPSLRIIHNDALINSSFKRSSNSPSISILQTFHIESPKPEREREESCPSLGHDWCSSPPSHACDVIYVVRYRLHRMKKKLKDELEDKDTSGVYMLHLWEKIQCFRCTATDIYGR* 167
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00001 166 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 117 146 IPR039997 GO:0001113(PANTHER)|GO:0005673(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00001 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5448966 Vivi Vivi11g01082 Vivi-Chr11:19782559 Vivi1g00001 Vivi-Chr1:10731