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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00006 ATGATTGTGGTTGATTCTAGTGTTGAGGCTAAGGGAGCTCTACAATGGGCTCTCTCCCACACTGTTCAGAGTCAAGACACTTTGATTCTTCTCTATGTGACCAAGCCTTGTAAACAAGGTGAAGAGTGTGGCAAGGAGGTGGCTCCAAGGGTTTATGAGCTTCTTTACTCTATGAAGAATGTGTGTCAATTGAAGAGACCTGAGGTGGAAATAGAGGTTGCAGTGGTGGAAGGGAAGGAGAAAGGTCCAACCATAGTGGAAGAGGCGAAAAAACGAGGGGTGGCACTACTGGTTCTGGGGCAGAGAAAGCGGTCCATGACATGGAGGCTTGTGATGATGTGGGCTGTGAATCGAGTTGGGGGTGGGGTGGTGGAGTACTGTATCCAGAATGCTGATTGCATGGCAATTGCAGTGAGGAGGAAAAGCAAGAAGGGCGGAGGGTATTTGATCACCACCAAGCGTCACAAAGACTTCTGGCTCCTGGCCTGA 489 49.49 MIVVDSSVEAKGALQWALSHTVQSQDTLILLYVTKPCKQGEECGKEVAPRVYELLYSMKNVCQLKRPEVEIEVAVVEGKEKGPTIVEEAKKRGVALLVLGQRKRSMTWRLVMMWAVNRVGGGVVEYCIQNADCMAIAVRRKSKKGGGYLITTKRHKDFWLLA* 163
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00006 162 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 142 - -
Vivi1g00006 162 Gene3D HUPs 1 147 IPR014729 -
Vivi1g00006 162 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 162 - -
Vivi1g00006 162 Pfam Universal stress protein family 1 139 IPR006016 -
Vivi1g00006 162 CDD USP-Like 1 138 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00006 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5465407 Vivi Vivi18g00275 Vivi-Chr18:3064369 Vivi1g00006 Vivi-Chr1:109279
5468113 Vivi Vivi1g00006 Vivi-Chr1:109279 Vivi17g00436 Vivi-Chr17:5431008