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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00009 ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAGGTGACATTTGCAAAAAGAAGGAATGGACTGCTGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGCATGCCAGAGACACTTGAGAGGTATCAAAGATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAGAAATTTTCTGGGGGAAGATTTGGGGCATTTGGGTACAAAGGAGCTTGAGCAGCTTGAGCATCAGCTGGACAAGTCATTGAAGCAAATCAGATCAACAAAGACCCAATTTATGCTTGATCAACTGTCTGATCTTCAAAGAAAGGAACAAATCCTAATGGAAGCCAACAACGCCTTAAGGAGGAAGTTGGGTGAAAGCAGTGCAGAAAGTGGCCTGGGATCAACATGGGAAGCTGCCGCACATAATCTACCATATAATCGCGAGCCTGTTCAGTCAGAGGACTTTTTCGAGCCTCTGCAATGCGATAGCACTTTGCAGATTGGTTACAATCCTGTGCTGCGGGTTGAGATGAACGGAGCCAGCACAACACAAAATGTCAATGGATTCATCCCTGGGTGGATGGTTTGA 732 46.45 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMPETLERYQRCSYSALEASQPAKETQNSYQEYLKLKSKVEVLQRTQRNFLGEDLGHLGTKELEQLEHQLDKSLKQIRSTKTQFMLDQLSDLQRKEQILMEANNALRRKLGESSAESGLGSTWEAAAHNLPYNREPVQSEDFFEPLQCDSTLQIGYNPVLRVEMNGASTTQNVNGFIPGWMV* 244
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00009 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 FunFam MADS-box transcription factor 1 13 89 - -
Vivi1g00009 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 Coils Coil 124 144 - -
Vivi1g00009 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Vivi1g00009 243 Gene3D - 13 101 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Vivi1g00009 243 Coils Coil 150 173 - -
Vivi1g00009 243 CDD MADS-MEF2-like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Vivi1g00009 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Vivi1g00009 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00009 K09264 MADS-box transcription factor, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5451267 Vivi Vivi14g00994 Vivi-Chr14:23320331 Vivi1g00009 Vivi-Chr1:194107
5451268 Vivi Vivi14g00996 Vivi-Chr14:23363222 Vivi1g00009 Vivi-Chr1:194107
5451360 Vivi Vivi14g01150 Vivi-Chr14:25509955 Vivi1g00009 Vivi-Chr1:194107
5453153 Vivi Vivi17g00437 Vivi-Chr17:5434020 Vivi1g00009 Vivi-Chr1:194107
5453154 Vivi Vivi17g00438 Vivi-Chr17:5457738 Vivi1g00009 Vivi-Chr1:194107
5455244 Vivi Vivi1g00009 Vivi-Chr1:194107 Vivi1g01272 Vivi-Chr1:21368898
5462888 Vivi Vivi1g00008 Vivi-Chr1:150382 Vivi1g00009 Vivi-Chr1:194107
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g00977 . 1 62 MADS-box Transcription Factor family AT1G77980 66.129 3.86e-25 92.4
Vivi13g01030 . 1 236 MADS-box Transcription Factor family AT5G13790 55.466 1.20e-85 254.0
Vivi3g00909 . 1 238 MADS-box Transcription Factor family AT2G22540 53.975 6.00e-76 227.0
Vivi17g00565 . 1 309 MADS-box Transcription Factor family AT1G18750 60.0 1.99e-121 354.0
Vivi17g00438 . 1 250 MADS-box Transcription Factor family AT3G02310 63.347 1.12e-103 299.0
Vivi17g00437 . 1 236 MADS-box Transcription Factor family AT5G60910 62.917 8.63e-101 291.0
Vivi17g00095 . 1 178 MADS-box Transcription Factor family AT2G45660 46.629 2.83e-49 159.0
Vivi18g00212 . 29 202 MADS-box Transcription Factor family AT5G20240 57.065 5.66e-68 204.0
Vivi18g00227 . 40 156 MADS-box Transcription Factor family AT1G29960 31.387 6.21e-12 58.9
Vivi18g00364 . 1 79 MADS-box Transcription Factor family AT1G77950 64.557 7.86e-33 112.0
Vivi18g00509 . 1 238 MADS-box Transcription Factor family AT2G22540 65.272 3.63e-102 294.0
Vivi18g00548 . 1 233 MADS-box Transcription Factor family AT3G57230 65.532 5.02e-107 307.0
Vivi18g00689 . 1 215 MADS-box Transcription Factor family AT1G22130 44.053 6.78e-52 172.0
Vivi18g00833 . 48 157 MADS-box Transcription Factor family AT1G29960 31.061 8.50e-13 60.8
Vivi18g01037 . 1 232 MADS-box Transcription Factor family AT3G54340 60.345 1.33e-96 280.0
Vivi1g01062 . 2 103 MADS-box Transcription Factor family AT5G60440 64.706 2.52e-43 141.0
Vivi1g01063 . 2 170 MADS-box Transcription Factor family AT5G60440 51.744 2.42e-51 165.0
Vivi1g01271 . 63 175 MADS-box Transcription Factor family AT1G26310 37.168 2.09e-12 61.2
Vivi1g01272 . 1 244 MADS-box Transcription Factor family AT1G24260 79.268 2.13e-129 364.0
Vivi15g00190 . 1 170 MADS-box Transcription Factor family AT2G22540 62.941 6.50e-69 207.0
Vivi1g00138 . 1 240 MADS-box Transcription Factor family AT5G23260 51.6 2.11e-69 212.0
Vivi1g00009 . 1 250 MADS-box Transcription Factor family AT3G02310 63.492 7.30e-106 304.0
Vivi1g00008 . 1 256 MADS-box Transcription Factor family AT1G69120 70.312 3.60e-119 338.0
Vivi19g00011 . 2 164 MADS-box Transcription Factor family AT1G29960 51.534 1.91e-59 181.0
Vivi19g00028 . 1 78 MADS-box Transcription Factor family AT1G77980 60.256 1.27e-26 97.4
Vivi11g00332 . 48 157 MADS-box Transcription Factor family AT1G29960 32.576 1.38e-12 60.8
Vivi3g00956 . 1 239 MADS-box Transcription Factor family AT2G22540 54.167 6.11e-79 234.0
Vivi3g00962 . 88 146 MADS-box Transcription Factor family AT2G22540 50.847 3.67e-11 53.9
Vivi16g00549 . 8 210 MADS-box Transcription Factor family AT5G62165 61.576 2.57e-85 249.0
Vivi16g00545 . 1 252 MADS-box Transcription Factor family AT2G45650 50.781 3.91e-81 242.0
Vivi4g01067 . 47 208 MADS-box Transcription Factor family AT3G54340 46.914 7.48e-50 159.0
Vivi15g00103 . 1 62 MADS-box Transcription Factor family AT4G24540 74.194 1.00e-28 100.0
Vivi15g00099 . 1 62 MADS-box Transcription Factor family AT4G24540 75.806 1.10e-29 105.0
Vivi2g00422 . 8 210 MADS-box Transcription Factor family AT4G22950 59.024 4.44e-69 208.0
Vivi10g00290 . 18 252 MADS-box Transcription Factor family AT4G18960 75.745 5.53e-126 355.0
Vivi10g00374 . 1 159 MADS-box Transcription Factor family AT1G29960 47.799 2.30e-52 164.0
Vivi10g00466 . 1 164 MADS-box Transcription Factor family AT5G60440 45.614 1.33e-43 146.0
Vivi7g01111 . 1 306 MADS-box Transcription Factor family AT1G22130 50.938 1.40e-97 290.0
Vivi18g01659 . 1 210 MADS-box Transcription Factor family AT1G71692 62.381 8.31e-78 230.0
Vivi18g01639 . 1 230 MADS-box Transcription Factor family AT4G09960 74.783 5.89e-120 339.0
Vivi10g00729 . 1 186 MADS-box Transcription Factor family AT5G23260 57.068 5.28e-75 225.0
Vivi15g00504 . 1 252 MADS-box Transcription Factor family AT2G45650 69.565 6.41e-121 343.0
Vivi15g00502 . 1 209 MADS-box Transcription Factor family AT2G45660 72.857 4.00e-100 287.0
Vivi7g00568 . 37 162 MADS-box Transcription Factor family AT1G29960 27.82 7.67e-08 48.9
Vivi14g00025 . 1 178 MADS-box Transcription Factor family AT5G48670 65.169 2.22e-71 219.0
Vivi14g01150 . 1 193 MADS-box Transcription Factor family AT5G60910 40.299 2.20e-39 133.0
Vivi8g01466 . 1 164 MADS-box Transcription Factor family AT5G13790 54.749 2.52e-60 187.0
Vivi8g00888 . 40 164 MADS-box Transcription Factor family AT1G29960 35.075 5.85e-20 80.1
Vivi4g00167 . 1 178 MADS-box Transcription Factor family AT1G18750 32.022 7.22e-28 105.0
Vivi14g00994 . 1 236 MADS-box Transcription Factor family AT5G60910 61.475 4.58e-98 285.0
Vivi14g00996 . 1 251 MADS-box Transcription Factor family AT5G15800 75.697 1.63e-128 362.0
Vivi3g00785 . 3 167 MADS-box Transcription Factor family AT5G60440 51.807 1.59e-51 167.0
Vivi3g00784 . 2 183 MADS-box Transcription Factor family AT5G60440 55.978 1.23e-64 200.0
Vivi3g00783 . 1 192 MADS-box Transcription Factor family AT5G60440 49.746 4.05e-53 170.0
Vivi3g00779 . 2 190 MADS-box Transcription Factor family AT5G60440 55.276 1.18e-67 208.0
Vivi3g00778 . 2 197 MADS-box Transcription Factor family AT5G60440 55.838 6.07e-69 211.0
Vivi3g00838 . 1 228 MADS-box Transcription Factor family AT4G37940 63.519 3.16e-100 289.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi K-box 6.2e-30 No_clan TF MADS-MIKC