Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00011	ATGGAGTCTTGGAGCCATGCCTTAGAAAAGAAGATAACCCCTTTTAATTTTGAAAATGATGGGCTTGTCTTGGATAGAGACGCAGTTGAGAGCATGGAATTCATGGAATTGGATTCCCCTGATTTGGTGAGAAAACTGCTTCCCAGTAACCCAAGTGTGGGGTTTTTAAGTGGTGAGATTGGTAGAAATTCTAGTAAAAGAATAGTTTCTCCTACTAATATGGTTACTTCAAATCCAATTTTCGGGGGAGAGGAGTCGAGTTCGAGGCTTTCAAGTTCTTTCATGGAGTCAAACAGTCAAGATTCCTCAATAATTGATTTGAAACTGGGGAGATTGGCTGATTGTATAGATGCCAAGAATAACAGATGCTCAAAAGAGGGATCAGTTTTATCTTCACTAGCTTCATCCATGCCGGCAAAGAGAGCCCGCACCACGAGTGTGTGTTCTCAAACTCCTCTCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCCTCGAAGGACTACCATAAGAGGCATAAAGTTTGCGATGTTCATTCAAAGACTCCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGGAGTTGCCGTAAACGGCTTGCAGGTCACAATGAGCGTAGGAGGAAGCCTCAATTGGATACTCACTCTGGTAAACCACAGAAACTGCTTCAGTCATATCCAGGCACCAGGATTCTGGGGACTTCCTTAGCAAAGAGACCACCCTTTGTTTTCCAGGACATACTTCCTGGCAGTGTTTATTGTCCAGATGGATATGGACAAGCTAATCCATCCAGGAGCATCAAATTAGAAAAGGAGCCAATTTACAGCTCTCAATTAGTGATACCTATAAGTGGGCAGTTGCCTCCAAAATCCTTTCTCCATCTTTATGGCACCGAGAGACAATGTCCTCCTGGGTTTCTATCATCTGGAACTGAGGACTGCACTGGCTTTTACCCAGCATCAACAGTTCAAGAATTACCTGGAGTCTCAAAATCCAATTGTGCTCTCTCTCTTCTGTCAGCTCAATCGCAGGACTTGTCAAACCATTTGATGGGAATTCCAATGGCTAACCCCCCCACAGTCCAAGGCTGTCATGCTCATTACAGTGCAGTTCACAATTCTGACAAGCCAATTGGGATGAGTTCTTTGGAAAAATTTGCATCAAATGGTTCCTATTCATCTAGGATGAACTCAGTGGAAGTTGCCCAGATGGGGCCTGTAATGCTCCCTGATGGTGGTAATGCTGTTAGCTTTGAAGTCCGCACAAACAGGAATTTTCAGGGATCTGATTTTCTGAATGCTAAGTATTCTCACTCTTCTGAACGTGAACCTACAGTTGATTTACTCCAATTGTCATCACATCTTAAAAGAGTAGAGTGGCAGAGGAATTATATGCATGTGAAGCAAGAAAATGATGATTTTCACTGTTTTCCTACTACTTAA	1497	42.82	MESWSHALEKKITPFNFENDGLVLDRDAVESMEFMELDSPDLVRKLLPSNPSVGFLSGEIGRNSSKRIVSPTNMVTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKLGRLADCIDAKNNRCSKEGSVLSSLASSMPAKRARTTSVCSQTPLCQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQSYPGTRILGTSLAKRPPFVFQDILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTERQCPPGFLSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGCHAHYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNRNFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDFHCFPTT*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00011	498	Pfam	SBP domain	154	227	IPR004333	GO:0003677(InterPro)
	Vivi1g00011	498	FunFam	Squamosa promoter-binding-like protein 14	145	215	-	-
	Vivi1g00011	498	MobiDBLite	consensus disorder prediction	218	241	-	-
	Vivi1g00011	498	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	94	480	IPR044817	GO:0003677(InterPro)
	Vivi1g00011	498	ProSiteProfiles	Zinc finger SBP-type profile.	151	228	IPR004333	GO:0003677(InterPro)
	Vivi1g00011	498	SUPERFAMILY	SBT domain	152	233	IPR036893	GO:0003677(InterPro)\|GO:0005634(InterPro)
	Vivi1g00011	498	Gene3D	-	145	215	IPR036893	GO:0003677(InterPro)\|GO:0005634(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g00011	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	5451884	Vivi	Vivi15g00366	Vivi-Chr15:13245041	Vivi1g00011	Vivi-Chr1:230334
	5452953	Vivi	Vivi17g00097	Vivi-Chr17:904847	Vivi1g00011	Vivi-Chr1:230334
	5455245	Vivi	Vivi1g00011	Vivi-Chr1:230334	Vivi1g01258	Vivi-Chr1:21064305
	5465871	Vivi	Vivi1g00011	Vivi-Chr1:230334	Vivi1g01273	Vivi-Chr1:21412776

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g01177	.	119	204	SBP-box gene family	AT3G60030	66.279	2.04e-37	135.0
	Vivi17g00097	.	1	359	SBP-box gene family	AT5G50670	43.766	3.41e-79	245.0
	Vivi1g01258	.	1	394	SBP-box gene family	AT5G43270	37.963	2.96e-64	210.0
	Vivi1g01273	.	1	294	SBP-box gene family	AT5G50670	44.85	7.00e-57	189.0
	Vivi1g00011	.	78	403	SBP-box gene family	AT1G69170	37.905	5.35e-63	209.0
	Vivi18g00024	.	1	1034	SBP-box gene family	AT1G20980	53.466	0.0	989.0
	Vivi19g00192	.	38	174	SBP-box gene family	AT1G53160	61.151	3.84e-46	148.0
	Vivi5g00250	.	8	881	SBP-box gene family	AT2G47070	50.858	0.0	880.0
	Vivi5g00384	.	124	794	SBP-box gene family	AT5G18830	52.77	0.0	700.0
	Vivi15g00367	.	1	312	SBP-box gene family	AT1G02065	49.85	3.52e-83	255.0
	Vivi1g00870	.	173	254	SBP-box gene family	AT3G60030	72.289	3.41e-36	128.0
	Vivi1g00869	.	173	254	SBP-box gene family	AT3G60030	72.289	3.35e-34	122.0
	Vivi12g00273	.	48	174	SBP-box gene family	AT1G53160	57.364	1.22e-47	151.0
	Vivi10g00121	.	3	131	SBP-box gene family	AT2G33810	59.398	5.05e-45	142.0
	Vivi7g00464	.	1	881	SBP-box gene family	AT2G47070	56.545	0.0	963.0
	Vivi11g00804	.	117	264	SBP-box gene family	AT5G43270	60.377	6.84e-56	185.0
	Vivi14g01148	.	1	273	SBP-box gene family	AT5G50670	44.765	2.43e-55	184.0
	Vivi8g01249	.	32	375	SBP-box gene family	AT2G42200	47.814	1.86e-82	253.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Vivi	SBP	2.4e-32	No_clan		TF	SBP