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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00019 ATGCCCACTCTCACAAAGCTCTTCTCCATGCAAGAGGCCTCTCTCCACAACTCCAAGGACGACTGTTGGGTCGTCATCGATGGCAAGGTATATGATGTGACAACTTATTTGGATGAACACCCTGGTGGAGATGATGTGATCCTTGCTACAACTGGGAAAGATGCCACCGATGATTTTGAGGATGCTGGGCATAGCAATGATGCAAGGGAGCTTATGAAGAGCTTTTGTGTTGGGGAGCTTGATATGTCTTCCCCAGCTATTCCAGAACTTAAAATCTCTGACAAGAAACAACAAACAGATGTTGCTCAGAAGCTCTTGAACTTGACAAAACAATACTGGGCTGTTTCTGTAGCCATAGTTGGCATCTCTGTGGTGGCTGGCTTCTTGTTTATGCGGAAGAAGTAA 405 45.68 MPTLTKLFSMQEASLHNSKDDCWVVIDGKVYDVTTYLDEHPGGDDVILATTGKDATDDFEDAGHSNDARELMKSFCVGELDMSSPAIPELKISDKKQQTDVAQKLLNLTKQYWAVSVAIVGISVVAGFLFMRKK* 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00019 134 FunFam Cytochrome b5 type B 3 85 - -
Vivi1g00019 134 Gene3D - 3 85 IPR036400 -
Vivi1g00019 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Vivi1g00019 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Vivi1g00019 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Vivi1g00019 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Vivi1g00019 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Vivi1g00019 134 PANTHER CYTOCHROME B5 4 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Vivi1g00019 134 SMART Cyt-b5-2 8 81 IPR001199 -
Vivi1g00019 134 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 87 IPR036400 -
Vivi1g00019 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Vivi1g00019 134 Pfam Cytochrome b5-like Heme-Steroid binding domain 10 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00019 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5455250 Vivi Vivi1g00019 Vivi-Chr1:297105 Vivi7g00751 Vivi-Chr7:11372095
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi18g00325 . 1 98 NADPH P450 reductases gene family AT5G48810 39.796 6.32e-21 87.8
Vivi18g00676 . 6 134 NADPH P450 reductases gene family AT5G48810 49.275 1.10e-40 131.0
Vivi1g00019 . 1 134 NADPH P450 reductases gene family AT1G26340 70.149 1.16e-67 199.0
Vivi11g00440 . 39 281 NADPH P450 reductases gene family AT5G17770 43.295 9.11e-69 214.0
Vivi9g00274 . 28 120 NADPH P450 reductases gene family AT1G60660 68.817 1.66e-46 143.0
Vivi13g00922 . 30 281 NADPH P450 reductases gene family AT5G17770 69.841 5.01e-139 392.0
Vivi7g00751 . 4 134 NADPH P450 reductases gene family AT2G32720 78.626 2.43e-78 226.0
Vivi8g00084 . 31 281 NADPH P450 reductases gene family AT5G17770 82.47 4.54e-161 447.0
Vivi13g01103 . 6 83 NADPH P450 reductases gene family AT1G26340 41.026 9.80e-15 67.0
Vivi6g00897 . 30 281 NADPH P450 reductases gene family AT5G17770 79.365 4.20e-155 432.0
Vivi16g00991 . 1 134 NADPH P450 reductases gene family AT5G53560 79.851 3.11e-80 231.0