AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00020 ATGAACATTTTCAAGCAGCTAGCTTCCACCAGATGTGGGTTTAATGGTGGAATGAAGTCTTGTAGAGCAACATGTGTCTCTCTCCTCCATTCATCCTCAGGTACATCGGTGGAAGTACATTCCCAAGACCAGGAAGTAGTAATTGCTCTAGGAAGCAATGTGGGCAATAGAGTTGACAATTTCAATGAGGCCTTGCAGCTAATGAAGAAGTCAGGCATGCACATAACTAGACATGGATGTTTGTATGAGACAGAGCCTGTCTATGTGACTGATCAACCTCTCTTTCTCAACTCTGCTGTTAGAGGTATTACAAAACTTGGTCCCCATGAACTACTCAGAGTTCTGAAGAAAATTGAAAAGGATATGGGTCGGACTGATGGAATAAGGTATGGTCCGAGACCAATTGACCTGGATATTTTGTTCTATGGGAAGTTCAGGGTTAACTCTGAGATTCTTACCATCCCCCATGAAAGAATTTGGGAGAGACCTTTTGTGATGGCCCCATTGATGGATGTAATGGGATCAGCTATGGAGAGTGATACGAACGGGTTGAAAAGGGTTTTACCCACTGGAAATGTTTTATGGGACTGGTCACTGAAAACCTCTATGATGGGTATCCTTAATCTGACCCCAGATAGTTTTAGTGATGGAGGGAAGTTCCAGTCTGTGGAGGCTGCAGTTTCTCAGGTCCGCTTGATGATCTTAGAAGGGGCAGATATTATTGATATTGGTGCACAGTCCACACGCCCAATGGCATCTAGGCTTTCAGCTCAAGAGGAATTAGATAGGTTAATCCCTGTCTTGGATGCTGTTCTAAAGATGCCTGAGGTAGAGGGGAAGCTGTTATCTGTGGATACTTTTCATTCTGAAGTTGCTTCAGAAGCAATTGGCAAGGGAGCTCATATTGTAAATGATGTATCTGCAGGACAGCTAGATCCTAACATGCTTGATGTTGTTGCCAGCCTTAAGGTTCCATATGTTGCTATGCACATGAGGGGGAACCCATCTACCATGCAGAATAGCGAGAACCTGCAATACGATAATGTTTGCGAGCAGGTTGCCTCTGAGTTATACTTGCGAGTTAGAGATGCTGAATTATCTGGTATTCCAGCCTGGAGGATAATTATTGACCCTGGAATTGGATTCTCAAAGAACACTGAACATAATTTGGACATTCTCATGGGGTTGCCAAACATACGAATGGAGCTTGCAGGGAAGAGTTTGGCTCTCTCTCATGCTCCTATGTTGATTGGACCCTCGAGGAAGAGATTTTTAGGTGATATTTGTGCTCGCCCTGCTGCAGCTGAGAGAGACCCTGCAACCATTGCTGCTGTGACTGCTGGGGTTTTGGGCGGTGCAAACATTGTTAGGGCACATAATGTCAAAGATAATTTAGATGCTGTGAAGCTCTGTGATGCAATGGTGAAGCGTGAGAGATCTCAGGCATGA 1449 44.51 MNIFKQLASTRCGFNGGMKSCRATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDNFNEALQLMKKSGMHITRHGCLYETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEKDMGRTDGIRYGPRPIDLDILFYGKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESDTNGLKRVLPTGNVLWDWSLKTSMMGILNLTPDSFSDGGKFQSVEAAVSQVRLMILEGADIIDIGAQSTRPMASRLSAQEELDRLIPVLDAVLKMPEVEGKLLSVDTFHSEVASEAIGKGAHIVNDVSAGQLDPNMLDVVASLKVPYVAMHMRGNPSTMQNSENLQYDNVCEQVASELYLRVRDAELSGIPAWRIIIDPGIGFSKNTEHNLDILMGLPNIRMELAGKSLALSHAPMLIGPSRKRFLGDICARPAAAERDPATIAAVTAGVLGGANIVRAHNVKDNLDAVKLCDAMVKRERSQA* 483
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00020 482 PANTHER FOLATE SYNTHESIS PROTEINS 36 475 IPR045031 GO:0004156(PANTHER)|GO:0009396(InterPro)|GO:0046654(PANTHER)
Vivi1g00020 482 CDD DHPS 201 472 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Vivi1g00020 482 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 46 177 IPR035907 -
Vivi1g00020 482 ProSitePatterns Dihydropteroate synthase signature 1. 203 218 IPR000489 GO:0042558(InterPro)
Vivi1g00020 482 Gene3D - 43 186 IPR035907 -
Vivi1g00020 482 CDD HPPK 46 172 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Vivi1g00020 482 NCBIfam dihydropteroate synthase 203 473 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Vivi1g00020 482 SUPERFAMILY Dihydropteroate synthetase-like 190 476 IPR011005 GO:0044237(InterPro)
Vivi1g00020 482 ProSitePatterns Dihydropteroate synthase signature 2. 237 250 IPR000489 GO:0042558(InterPro)
Vivi1g00020 482 ProSiteProfiles Pterin-binding domain profile. 201 469 IPR000489 GO:0042558(InterPro)
Vivi1g00020 482 FunFam Dihydropteroate synthase 188 479 - -
Vivi1g00020 482 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 47 173 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Vivi1g00020 482 Pfam Pterin binding enzyme 204 459 IPR000489 GO:0042558(InterPro)
Vivi1g00020 482 Gene3D - 187 480 IPR011005 GO:0044237(InterPro)
Vivi1g00020 482 NCBIfam 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 46 172 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Vivi1g00020 482 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 129 140 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00020 K13941 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15]
Vivi1g00020 K00796 dihydropteroate synthase [EC:2.5.1.15]
Vivi1g00020 K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]