AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00022 ATGGCTCATTCCTGTGTTCACAAAGATAGAGGGGAGTTGAGGATTTATGAAAATTTGAATGAGCTCAGCACCGATTTAGCCGACTATATCGCTGAATTATCAGAGGTCTCGGTGAAAGAGCGAGGTGTCTTTGCCATTGCTTTATCTGGTGGTTCTCTCATTGACTTGATGGGAAAACTGTATGAAGCTCCTTACAACAAGACTGTTGACTGGGCTAAATGGTATATATTTTGGGCGGATGAGCGTGTGGTGGCAAAGAACCATTCTGATAGCAATTATAAGTTAGCAAAAGATGGCCTATTGTCCAAGGTGCCTGTTGTTCCCAGCCATGTACATTCTATCAATGATACGGTGACAGCAGAGGAAGCTGCTGATGAGTATGGGTTTGCCATACGACAGCTAGTGAAGACCCGCGTCATCAGCGTATCTGATACCAGTGATTGCCCCAAGTTTGATCTCATCCTTCTTGGAATGGGCTCTGATGGACATGTTGCCTCGCTGTTCCCTAATCATTCTGTGCTCGAGGAGAAGGATGAATGGGTAACTTTTATAACTGATTCTCCCAAGCCTCCACCGGAGAGGATTACTTTCACACTGCCCGTCATCAACTCAGCGTCCAATGTGGCTGTGGTCATCACAGGTGGCAACAAAGCAGAGGCCGTACACTTGGCAATTGATGATGTGGGACCTGACTGCCCATCACTGCCTGCGCGGATGGTCCAGCCAACTAAGGGGAAGTTGGTGTGGTTTATTGACAAGCCGGCTGCCCTGAAACTTGATTGCTGTCAATTCTCTGAATAG 801 47.19 MAHSCVHKDRGELRIYENLNELSTDLADYIAELSEVSVKERGVFAIALSGGSLIDLMGKLYEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKDGLLSKVPVVPSHVHSINDTVTAEEAADEYGFAIRQLVKTRVISVSDTSDCPKFDLILLGMGSDGHVASLFPNHSVLEEKDEWVTFITDSPKPPPERITFTLPVINSASNVAVVITGGNKAEAVHLAIDDVGPDCPSLPARMVQPTKGKLVWFIDKPAALKLDCCQFSE* 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00022 266 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Vivi1g00022 266 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 261 IPR037171 -
Vivi1g00022 266 PANTHER 6-PHOSPHOGLUCONOLACTONASE 2 259 IPR039104 -
Vivi1g00022 266 Gene3D - 9 261 - -
Vivi1g00022 266 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 20 249 IPR006148 GO:0005975(InterPro)
Vivi1g00022 266 CDD 6PGL 21 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Vivi1g00022 266 NCBIfam 6-phosphogluconolactonase 15 258 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00022 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5452871 Vivi Vivi16g00989 Vivi-Chr16:21450859 Vivi1g00022 Vivi-Chr1:312339