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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00028 ATGGGTCGAGGAGTCAGCAGTGGTGGAGGACAGAGTTCATTGGGCTACCTTTTTGGGAGTGGAGAGGCTCCCAAACCGGCGCCAAACAATGCCCCAGCTTCTTCTAGCGAAGGACCAGCTGCTAATACTGGGGCTTCCACCAAGCCCATTGCTGCAGCTCAACCAACAGATGTTACTAAGCAGATACCTGCAGGTATCAATAGTAACACTGCAAACAACTACCACCGGGCGGATGGCCAGAACTGTGGCAACTTCATCACAGGTCGTCCCTCAACTAAGGTCCACTCTGCACCTGGTGGTGGATCATCTTTGGATTACCTCTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGCTAGTGGTGGTGGTGCTAGTGGTGGTGGTGGTAAATGA 396 54.04 MGRGVSSGGGQSSLGYLFGSGEAPKPAPNNAPASSSEGPAANTGASTKPIAAAQPTDVTKQIPAGINSNTANNYHRADGQNCGNFITGRPSTKVHSAPGGGSSLDYLFGGGGGGGGGGGASGGGASGGGGK* 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00028 131 PANTHER SPR1 1 109 IPR039613 GO:0010005(PANTHER)|GO:0043622(PANTHER)|GO:0043622(InterPro)
Vivi1g00028 131 MobiDBLite consensus disorder prediction 29 75 - -
Vivi1g00028 131 MobiDBLite consensus disorder prediction 109 131 - -
Vivi1g00028 131 MobiDBLite consensus disorder prediction 1 75 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00028 K18635 protein SPIRAL1 and related proteins
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5455256 Vivi Vivi1g00028 Vivi-Chr1:390750 Vivi2g00030 Vivi-Chr2:371214
5465176 Vivi Vivi16g00927 Vivi-Chr16:20998715 Vivi1g00028 Vivi-Chr1:390750
5465983 Vivi Vivi1g00625 Vivi-Chr1:7171468 Vivi1g00028 Vivi-Chr1:390750
5467984 Vivi Vivi1g00028 Vivi-Chr1:390750 Vivi14g01022 Vivi-Chr14:23946686
5468117 Vivi Vivi1g00028 Vivi-Chr1:390750 Vivi17g00455 Vivi-Chr17:5652105