AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00040 ATGGATGCAGAAGAGAGAAAGAAGAATTCATCGGAGGTGACAGTGGAAGAGTGGAGTGGGTCGTCTTCATCGAAGCTCTCTAGAACTGCAACCATCACTTCGCTGTCCATCCGGAGATCTGGCAGTCGGTTCAGCCATGTCTGGAGGCGGATTCTCCAGGCATTTGTACCGGAGGGTTTTCCTAGCAGTGTAACTCCAGATTATGCTCCTTTTCAATTATGGGATTCATTGCAGGGCCTCTCAACTTATATACGTACCATGCTTTCGACCCAAGCTCTCCTAAGCGCCATTGGGGTCGGTGAGAAATCAGCAACTGTCATTGGAGCCACGTTTCAGTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGGGATGTTAATGGATCTTGTTTCTCCTTTGTTCCCTTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCACTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTTTCCTTTCTCTCACCATGTTTCATATGTATGCAAACTACAGGGCTGTTCGTTGCCTTATATTAACAACATTGAACAGTGAGAGAAGCTCAATTCTTATAGAGCATTTCATGGAGACTGGCCAAGTTTTATCCCCACAAGAGGTCTCTAAGATGGAACATGTTCTACCTTTATGGGCCTCATCATGGAGCTTGAAGAATGCAAAGTCACTGCATACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAAAGATTCAACAGCTTCAGATGTATTGCAATCATTCATTCATGCCCTTGTGATGGCAAACCTAGTGGATAAAAGCATATATATACATTTGGAGAGTCGATCATGGATGGATAAACAATATGAAAATTTTCTTCTTAAGTTACAGTCATCAGGTTGGAAAACAGAACGGCTACTGTCACCATCAATTATTTGGAGGGCAAATTGGATATGCGGGTCTTCAGATGAAAAGATTGAGTAG 1314 43.0 MDAEERKKNSSEVTVEEWSGSSSSKLSRTATITSLSIRRSGSRFSHVWRRILQAFVPEGFPSSVTPDYAPFQLWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLVSPLFPSAFVFIVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMVGMAFGMLLARITMGHSVAIWFSFLSLTMFHMYANYRAVRCLILTTLNSERSSILIEHFMETGQVLSPQEVSKMEHVLPLWASSWSLKNAKSLHTRIHLGVRVSSLDKLEVTDLLHSAESHYKKAKYLLLERKGIISVIMHKDSTASDVLQSFIHALVMANLVDKSIYIHLESRSWMDKQYENFLLKLQSSGWKTERLLSPSIIWRANWICGSSDEKIE* 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00040 437 PANTHER RUS1 FAMILY PROTEIN C16ORF58 9 420 IPR006968 -
Vivi1g00040 437 Pfam Vitamin B6 photo-protection and homoeostasis 45 280 IPR054549 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00040 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5450796 Vivi Vivi14g00206 Vivi-Chr14:2076186 Vivi1g00040 Vivi-Chr1:482030
5450797 Vivi Vivi14g00207 Vivi-Chr14:2077966 Vivi1g00040 Vivi-Chr1:482030
5450798 Vivi Vivi14g00210 Vivi-Chr14:2261167 Vivi1g00040 Vivi-Chr1:482030
5450799 Vivi Vivi14g00211 Vivi-Chr14:2273667 Vivi1g00040 Vivi-Chr1:482030
5455262 Vivi Vivi1g00040 Vivi-Chr1:482030 Vivi7g00556 Vivi-Chr7:6177974