AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00058 ATGATTGCCGATGTATCCAAGTCTGATAAAATTATTCTATCCAACCCAGAATTCCTTGCTGAGGGAACTGCAATTCAGGATCTAGATGTATATGCCCATTGGGTCCCTGTGGAGCGTATTATTTGCACCAATCTTTGGTCTGCTGAGCTCTCAAAGCTCGCTGCCAATGCCTTTTTGGCACAGAGGATCTCTTCGGTTAATGCCATGTCAGCTCTCTGTGAGGCCACTGGCGCAGATGTCACTGAAGTGTCTCATGCTGTTGGTAAGGACACAAGAATTGGGCCCAAGTTCCTGAACGCCAGTGTTGGTTTCGGTGGCTCCTGCTTCCAGAAGGATATCTTGAACTTGGTATATATCTGTGAGTGCAATGGGCTTCCTGAGGTAGCAAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAGACCCGCTTTGTTAACCGGGTGGTTTCCTCAATGTTTAACACAGTCTCAGGCAAGAAGATCGCCATTCTAGGCTTTGCCTTCAAGAAGGACACTGGTGACACAAGGGAGACCCCAGCCATTGATGTGTGCAAGGGGCTGTTGGGTGACAAAGCCCATTTGAGCATATATGACCCTCAGAAGTTTGATTGGGACCATCCAATTCATCTTCAACCCTTGAGCCCCACCTCTGTGAAGCAAGTCAGTGTGGTCTGGGATGCCTATACTGCTACAAAGGATGCCCATGGAATCTGCATCCTGACCGAGTGGGATGAGTTCAAGTCCCTTGATTACAAGAAGATCTATGACAACATGCAGAAACCCGCATTCGTCTTTGATGGGCGGAACGTTGTGGATGCAGAGAAACTGAGGGAAATCGGATTCATTGTTTACTCCATTGGTAAGCCATTGGATGCATGGCTCAAGGACATGCCCGCTGTGGCATAA 912 47.92 MIADVSKSDKIILSNPEFLAEGTAIQDLDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHLSIYDPQKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA* 304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00058 303 Pfam UDP-glucose-GDP-mannose dehydrogenase family, central domain 46 140 IPR014026 GO:0016616(InterPro)|GO:0051287(InterPro)
Vivi1g00058 303 Gene3D - 45 76 - -
Vivi1g00058 303 PIRSF UDPglc-DH-bac 2 30 IPR028357 GO:0000271(InterPro)|GO:0003979(InterPro)
Vivi1g00058 303 PIRSF UDPglc-DH-bac 28 292 IPR028357 GO:0000271(InterPro)|GO:0003979(InterPro)
Vivi1g00058 303 PIRSF UDPglc-GDPman-dh 28 290 IPR017476 GO:0016616(InterPro)
Vivi1g00058 303 PIRSF UDPglc-GDPman-dh 2 36 IPR017476 GO:0016616(InterPro)
Vivi1g00058 303 SMART UDPG-MGDP-dh-C-a-2-a 164 275 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Vivi1g00058 303 FunFam UDP-glucose 6-dehydrogenase 45 76 - -
Vivi1g00058 303 FunFam UDP-glucose 6-dehydrogenase 77 301 - -
Vivi1g00058 303 Pfam UDP-glucose-GDP-mannose dehydrogenase family, UDP binding domain 164 274 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Vivi1g00058 303 SUPERFAMILY UDP-glucose-GDP-mannose dehydrogenase C-terminal domain 151 286 IPR036220 -
Vivi1g00058 303 PANTHER UDP-GLUCOSE DEHYDROGENASE-UDP-MANNAC DEHYDROGENASE 29 293 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Vivi1g00058 303 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 46 145 IPR008927 -
Vivi1g00058 303 Gene3D - 77 301 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00058 K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr14:30133925 Vivi1g00058 Vivi-Chr1:605267 dispersed
Vivi Vivi-Chr1:605267 Vivi17g00626 Vivi-Chr17:7659526 wgd