AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00062 ATGGTGTTCAAGGGCACGGAAAAGAGGCCGGCTAGGGTTTTGGTGGAGGAAATTGGGAGCATGGGCGGGCACTTGAGTGCCTGCACATCGAGGGAGCACACGGCATACTGCGCTGAGGTCATGGACGAAAATGTTCCCAAGGCGCTGGATCTTCTTTCCGATATGTTGCAGCATTCGTGTTTCCGTGAGGATCAGATGGAGCGCGAGCGCGATCTGATTCTTCAACAAATTAAAGAGGTACAGGGGCCCAGTAAGGATATTATCTTTGACCATTTGCATGCAACTGCATTCCAGTACACACCTTTGGGTAGAACTGTTCTGGGATCTGCGAAAAATATCAAGACTATCCACAAATCTCATATTAAAGACTATATTTCAGCTCACTGTGCTGCCCACAGAATGGTAATTTCTGCTGCTGGAGCTGTTAAGCATGAGGATATTGTTGAGCAAGTGAAGAAGACATTTACAAAGCTATCAGCTAATCCTTCCGTGACTAGTCAGTTGGTTGCAGAGAAGCCAGCTGTTTTCACTGGATCTGAGGTTCGGATAATTGACGATGATCTTCCTCTAGCACAATTTGCAGTTGCATTCAAAGGAGCTTCATGGACAGATCCAGATTCCATCGCTTTGATGGTCATCAAGTTGATGCTGGGCTCTTGGAACAAAAATGCAGGAGGGGGAAAGCACATGGGTTCACAGCTTGTACAGAGGGTTGCCATTAATGAAATAGCTGAATGCATGATGGCTTTTAACACTAACTATAAAGACACAGGCTTGTTTGGTGTTTATGCTGTAGCCAAGCCAGATTGCTTGGATGATTTAGCTTATGCAATAATGCTTGAGATAAGTAAGTTACCTTATCGAGTCTCAGAGGAGGATGTTATTCGTGCTCGTAATCAGCTGAAATCTTCTCTGCTTCTTCATATTAATGGACTCAGCCATGTTGTTGAAGACATTGGTCGTCAGCTACTTACTTATGGCCGAAGAATTCCATTGGCTGAATTATTTGCAAGGATTGACGCGGTGGATGCCAACACTGTCAAACGCATTGCAAACCGTTTTATATTTGATAGGGATATTGCAATTGCTGCCCTGGGACCCATCCAGGGTTTACCCGACTACAACTGGTTCAGGCGCAGGACCTACTTGCTGCGTTACTAA 1161 45.22 MVFKGTEKRPARVLVEEIGSMGGHLSACTSREHTAYCAEVMDENVPKALDLLSDMLQHSCFREDQMERERDLILQQIKEVQGPSKDIIFDHLHATAFQYTPLGRTVLGSAKNIKTIHKSHIKDYISAHCAAHRMVISAAGAVKHEDIVEQVKKTFTKLSANPSVTSQLVAEKPAVFTGSEVRIIDDDLPLAQFAVAFKGASWTDPDSIALMVIKLMLGSWNKNAGGGKHMGSQLVQRVAINEIAECMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMLEISKLPYRVSEEDVIRARNQLKSSLLLHINGLSHVVEDIGRQLLTYGRRIPLAELFARIDAVDANTVKRIANRFIFDRDIAIAALGPIQGLPDYNWFRRRTYLLRY* 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00062 386 SUPERFAMILY LuxS-MPP-like metallohydrolase 1 155 IPR011249 GO:0046872(InterPro)
Vivi1g00062 386 Pfam Insulinase (Peptidase family M16) 1 108 IPR011765 -
Vivi1g00062 386 Gene3D - 168 386 - -
Vivi1g00062 386 Pfam Peptidase M16 inactive domain 118 301 IPR007863 -
Vivi1g00062 386 Gene3D - 1 157 - -
Vivi1g00062 386 PANTHER METALLOPROTEASE 1 367 IPR050361 GO:0005739(PANTHER)
Vivi1g00062 386 FunFam Mitochondrial-processing peptidase subunit beta, mitochondrial 172 386 - -
Vivi1g00062 386 SUPERFAMILY LuxS-MPP-like metallohydrolase 180 376 IPR011249 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00062 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr14:30192961 Vivi1g00062 Vivi-Chr1:656270 dispersed