AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00076 ATGGTACAATGTGTGTCAGTAAGCACTCTGACAACCTCTGGAAATGGTGGGGTTTATGGGTCCACTGCTTTATGGGGGAGACATTTCCAGTTAATGAGAAAAACCCAGATTCGCACAGGGAGTGAAAGAAATTTTCTTTGGCATCACTGTGCACAGAGATTATTCTTTGCCGGTCAACTTGTTATGCAGAGGCAAAGGAATTTGAGGGTTGAAGCTGGATGGCTGTTTAAAGGTGGTGGTGACCAGGGGTTAGATGCAAGCTCAGAGTGTAGTGAGAGTGCTAATGAGGATATTTTGATTTTCTTTTTCCAGCTGGACTTGGCGACTCGAGTACAGTATGCTTTGAATACGGAGCAGTATGAAATAGCGCAACAACTGAGAGATAAGCTGACTGAGGTTGAAGCAGAGGTTGTCAAGCAGCGAGAAGCAAAAAGGGGATCCACATCAAAGAGTGAAGCTCAAGACAAAGCTTTAAGTATGATACGTCTACGGGCAGACCTGCAGAAAGCGATTGAGGCAGAAAACTATGCATTGGCAGCTGAGTTGCGAGATGAAATTAACAAACTAGAGGCAGAGTCTCTGGCTGCATCAGCAAATGCTCTGGTGTATGAAAATACACCATATGCATTTCGTTTGGGCCAGAAAGTGAGGCATAAAGTGTTTGGCTATTCTGCTGTGATTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGAGGGAAAGCGCACATGTTGATAAGTTGACTCGGGGTTCTAATCAGCCATTTTATCAGGTATTGGTTGATGTACATGTAGACCCCAATCTATTAGTGGCATATGTTCCAGAGGAGAATTTGCTGGTCCCTGATGGACCAAGACCAAACAAGGGCAGGTTTGATCACCCCTATCTTTCTTTTTTATTTTACGGCATGGATGCAGCTGGAGATTTCATTCCAATCAAGCAGCTCCGGGAGAAGTACAATAGGCCCCGGCATGAAGTGCCTGGTGATCCACCAGGCGAGGGTGGAGAAGATGCTTAA 1023 45.26 MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQLVMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQYEIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAAELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICGMDPVCCESSSWRESAHVDKLTRGSNQPFYQVLVDVHVDPNLLVAYVPEENLLVPDGPRPNKGRFDHPYLSFLFYGMDAAGDFIPIKQLREKYNRPRHEVPGDPPGEGGEDA* 341
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00076 340 Coils Coil 116 143 - -
Vivi1g00076 340 Pfam UvrB-uvrC motif 161 191 IPR001943 GO:0005515(InterPro)
Vivi1g00076 340 SUPERFAMILY YccV-like 209 306 IPR036623 GO:0003677(InterPro)
Vivi1g00076 340 Pfam Hemimethylated DNA-binding protein YccV like 209 307 IPR011722 GO:0003677(InterPro)
Vivi1g00076 340 SMART YccV-like-2-a 209 313 IPR011722 GO:0003677(InterPro)
Vivi1g00076 340 Coils Coil 172 199 - -
Vivi1g00076 340 PANTHER YCCV-LIKE DOMAIN-CONTAINING PROTEIN 5 333 IPR053189 -
Vivi1g00076 340 Gene3D - 207 309 IPR036623 GO:0003677(InterPro)
Vivi1g00076 340 NCBIfam heat shock protein HspQ 208 311 IPR011722 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00076 - -