AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00140 ATGTCATTCAACAAGTCTCCTCTTTCAAGGCTTAAAAGGAGTCTCTCCCTTCAATCATGCTTCCCTGAAGTGAGGTCTGCAGAGGCATCTGGTTGCAAATCTCCTGATGACAATGCCTCAAGCGTAAATGGTGGACGTTCTTTTGATGACATACGTCATAATGTTGATACCTGCTTGGACATAGATGATCAGGGCATTTCCCCAGCTTCCAGTGGTGGCAAAACCTCTACTGCATCAAGGCGTATATTCCCTCTAGAAAGCAGGAGTCCGTGCAGATCAGTTTCTGATATCCAGAACTCTAAGTCTGAACTGCTTCAAGCTGTTCCAGAGGCAATTGGAAGTGATGCCCATGTGGCTTTGGATCTGTCCTCTTGGCCAGGTGGTTCCACCCACCCCAAGAATGAAACCAGCAAATCTGATGCAAGCCCAGTTAGACAAGCTGTGGATCATAGTTTTCCATTGGCTTCAGTGCATTATTCAGGTGCAATTTCTGGGGAGATAAGAAGCAATGGCCTTAAAGCATATGTTCTCCTGTGTCTTGCTGCACTCAATGGTGATTGGAAAAGTGCAAAAGCATTCCTGGAGTCAAATCCACAAGCAGTGAGAGCGAGGATCACAAGGCGTTCAGAAACTGCTCTTCATATTGCTGCCGGGGCAAGACATACAAGGTTTGTTGAGGAGCTAGTTAAATTAATGAAACCAGATGACTTGGCATTGCAGAACAAGGTTGGAAACACTGCTCTTTGCTTTGCTGCTGCATCTGGAATCACAAGGATTGCTGAGGTAATGGTGAATAAGAACAGGGAGTTACCAATGATTCGCGGTAGTAAAGGAGTAACACCACTCTACATGGCTGCATTAGTAGGTCACAAAGACATGGTAAGATATCTCTACTCTGTGACTGAGGAAGATAATTTAACCAAAGAAGATCGCATTGGACTTCTTGTTGCTGCTATTACTGCCAATCTATTTGATGTAGCCTTGCATATGCTTCATGAGGACCCAGAATTAGCTATGGCTCGAGATGGTGCATCTATTCATGTTATTCCAGGTTTCAAGTCAGTTTATGACAAGAAATTGATGCATATCCAGGCACTTGAGCTTGTCCAGCAACTTTGGGACAAAATTCTGTCCCTGGATCATGACCCAAAGATTGGGGAGTTAATCAGAACTCCTTCACGGTTACTATTTACTGCTGCTGAGTTGGGGATTGTAGAGTTTATAACTGTCCTCATCCGATCATATCCTGATCTTATTTGGAAAGTCAATGACCAAAGTCAAACTATATTTCATGTTGCAGTGGCACATCGCCAGGAAAAAATTTTTAATCTCATATATGAGATTGGTGCTCATAAGGATTATATTGCAGCATATAAAGACGAGAAGAACAATAACATGTTGCATTTGGCAGGAAAGTTAGCACCATCGAATCGACTGAAAATTGATTCTGGTGCAGCCTTTCAATTGCAAAGGGAATTGCATTGGTTCAAGGAGGTAGAAAAGATTATTCAACCTTCATACACAGAAATGAAAAATGAACAGGGGAGAACACCTCAGATTCTGTTTACAGAGGAGCACAAGGATTTAGTGCGAGAAGGTGAGAAGTGGATGAAGGATACTGCATCTTCATGCATGGTTGTTGCAACACTCATTGCCACTGTGATGTTTGCTGCTGCCTTCTCTGTACCTGGTGGCAACGATGATGACACAGGCAGGCCTATTTTCCTAACAAAAAAGTCCTTTTTGGTTTTTGCCATTTCAGATGCACTTGCTCTGTTCTCCTCTGCCACCTCAATATTGATATTCCTGTCCATTCTCACCTCACGCTATGCTGAGGAAGATTTCCTTGAGTCACTACCCAACAGGTTGATAATAGGCCTTGCAACCCTCTTCATCTCTGTTGCCACCATGATGATAGCTTTTTGTGCCACTCTTTTTATTGTTCTTGGTCCAGAATTAGTGTGGGTTGCAAATCCAATGGCTTTAGTTGCTTGCGTTCCTGTAACCTTGTTTCCTTTGTTAAAATTTCCCCTTTTCATTGATATGATCAGTCATAGATATAGATCTAGCATTATCTTTCGTCCAAATGTCAATGTTACTCTGCCCTTGCCGTATGCTATATTTCTCAGTCTATCCTTATCACTGATTAATCCATTCTGTTGCAACCAGGCTTTCCCTTCGGCATCAACATCCATTCCATTTCTATTTGCTATTGATCAATGCACCGAACAGCTACCTGGGGTGTCTCTCAGGAGGGACAGAGACAGAGAGAGAGAGAACGGAGAAGAGAGAGAAGAAACGACCCTCATCATCCACCGCCAGGGTAAGGGAGTTGGGCTTTATACGATGGCGGCGGACAGTAGCTCGGTTGATGTGATTCTCGATTTTCTGCGGAGAAATCGGTTTACTAGAGCGGAGGCCGCATTGCGGAGCGAGCTCGGTAACCGCCCTGATTTGAATGGCTTTCTTCAGAAGCTAACCCTAGAGGAAAAGGCTGATTCGGGTAATGTGGCGGGGGTGGAGGCTGCGAATGGGGATGGTTCTCAAGCACAGGGGTCGGGTTCGAAGGAGCTTGTAATCGTTAAAGAGATAGAGTGTGGGGAGAGGAATAAACCGCCTAGTGGGGATGCCACTAACATGAGAAGTGAAAAGAACTTCGCGTTTTCTAAGGGTTCGGAGGACACTGTGCTAGACTTGTATACTTGGAAATTCAATGCGGATCCATACCGGAACGAAGGTGGCAGTAGTGGTGTTAGTACCAAAAACAATAGCAACAGCAACAGCGTTTTGGAGCTGCAGGTATATGAACAATCTAGGTATCGAATTGGTGAGCTTTCTGATGCCGTTGCTAGTAAAGCCGACGCGAAATCCGGAGAAGAAGAGATTGGTTTTTCTGGTGAGAAGAGAGGTTCTTGGGTTGGAAGTTCTAGTGAAGTAACCACGGAGACAAACAAGTATGACCGAAAGGAACTTGATCAGAAACTTAAAAGTAGTAATAGTATCTTGTACTCTAAAGGCAACTTTGCTGATAATCCATGGTCAGAGCCCATGCATTCATCTTCAGACCAGTGGAAAAATTGTTCTATCAAGACTGTTTTCCCATTCTCCAAAGGGGATGTGTCAACCAGTTATGATAATGCTGCTGGTTCTGAGAAGAAGGATGGAAAGAGGAAAGCTGAGATGGGTGGTATTCGGGCAGCAATCAAAGAGCAGGTAGATGAGGTTGGGCGAGCTTTGTACTTTGGCAAGTCTCAAGGGAGTTCAGAGCTGAAGACCATCAGCAGTCTAAACTTTCCACTTGTATTAGAGTGTCAGAAGGAAGAATTACCTCGGTTGCCTCCTGTTAAACTTAAATCGGAGGAGAAACCATTGAATATTAGCTGGGAGGAGAAGTTTGAGCATGAGGGACCTGGTTCTAAGATTGCTGGTGTAGATAATGCGTTTCTTATAGGGTCGTATCTGGATGTTCCCATTGGACAAGAAATCAACTCTTCAGGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGGATTAAGTGAATCTATTGACTATCCAAATGAGTATTGGGATTCTGATGAATATGATGACGATGATGATGTTGGATACATGAGACAACCTATTGAAGATGAAACCTGGTTTCTGGCTCATGAAATTGATTACCCAAGTGACAATGAAAAAGGAACAGGGCATGGGAGTGTCCCAGACCCACAGGAAAGAGGTCCAACCAAAGATGAAGACGATGATCAATCTTTTGCAGAGGAGGATTCTTATTTCTCCGGGCTGTCGGTGACTGAAATGTATGGGAGGACTGAAGAAAATGATTTAATAGCTCAATATGATGGACAATTAATGGATGAAGAGGAACTGAATTTGATGCGTGCAGAACCTGTATGGCAGGGATTTGTCACTCAGACAAATGAACTTATCATGTTAAGGGATGGGAAGGTTATGAATGATTGTGGGAGGCCAAGGCTGGATGATAATTGTATGGATGATGATCAGCATGGTTCGGTTAGATCAATTGGTGTAGGGATCAACAGTGATGCTGCTGATATTGGCAGTGAAAAATATAATGATAGATCAAAGAGGTTGGTACAGGCAAGCTCTAGTAAATCTTTATGGTCAAATAATTGCAATGCTCCTACCAGTGATGAAACTGATGATTGTTTGAATGCTTTGATGAGGAATGCTGACATGCTTGCTTCATGGAGGCGGAAAAGCAGTGATTCTTCACCTGTCAAGAGTTCTAAAGATGAAAATAATGCTAATGCTGTTAGATCAGAGAACTCTTCTCCCTCAACTCTTTCTAATTATGGTTACAATGAAAGAGGACATGTGAAGAAAGAAGAGGATGAAAAAACTGGTGGTGCAAGAGAAGAAGATCCAGGAGTGTCATTGGAAGATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGAACTGGGTTTGAGGAGGACAAAAACTTCCATGTTGTTTTAAATTCAGTCATAGCTGGGCGCTATCATGTTACCGAGTATCTTGGGTCAGCTGCATTCAGCAAGGCTATTCAAGCACACGACCTACATACAGGCATGGATGTTTGTGTGAAAATTATAAAGAACAACAAGGATTTTTTTGATCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAGAACATTTATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATAGCAGATGTGAGGTGAAGGTCATTGACCTTGGAAGTAGTTGTTTTGAAACAGATCATCTCTGCTCATATGTTCAATCTAGGTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACATATAAATATTTCACCAAAAATCACATGCTCTATGAACGGAATCAGGACACCAACAGACTGGAATACCTCATCCCAAAAAAGACATCCTTGAGGCACCGGTTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATATGCTTGAAATTAACCCAAAAAAGCGCCCTTCTGCTTCTGAGGCTTTGAAGCACCCATGGTTATCATACCCATACGAGCCTATATCATCTTGA 5568 42.96 MSFNKSPLSRLKRSLSLQSCFPEVRSAEASGCKSPDDNASSVNGGRSFDDIRHNVDTCLDIDDQGISPASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVPEAIGSDAHVALDLSSWPGGSTHPKNETSKSDASPVRQAVDHSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGASIHVIPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFRPNVNVTLPLPYAIFLSLSLSLINPFCCNQAFPSASTSIPFLFAIDQCTEQLPGVSLRRDRDRERENGEEREETTLIIHRQGKGVGLYTMAADSSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLTLEEKADSGNVAGVEAANGDGSQAQGSGSKELVIVKEIECGERNKPPSGDATNMRSEKNFAFSKGSEDTVLDLYTWKFNADPYRNEGGSSGVSTKNNSNSNSVLELQVYEQSRYRIGELSDAVASKADAKSGEEEIGFSGEKRGSWVGSSSEVTTETNKYDRKELDQKLKSSNSILYSKGNFADNPWSEPMHSSSDQWKNCSIKTVFPFSKGDVSTSYDNAAGSEKKDGKRKAEMGGIRAAIKEQVDEVGRALYFGKSQGSSELKTISSLNFPLVLECQKEELPRLPPVKLKSEEKPLNISWEEKFEHEGPGSKIAGVDNAFLIGSYLDVPIGQEINSSGGKRTAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQERGPTKDEDDDQSFAEEDSYFSGLSVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLRDGKVMNDCGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEKYNDRSKRLVQASSSKSLWSNNCNAPTSDETDDCLNALMRNADMLASWRRKSSDSSPVKSSKDENNANAVRSENSSPSTLSNYGYNERGHVKKEEDEKTGGAREEDPGVSLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKFVNKNDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGSIDQGMLAKGRDTYKYFTKNHMLYERNQDTNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHMLEINPKKRPSASEALKHPWLSYPYEPISS* 1856
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 1425 1494 - -
Vivi1g00140 1855 Coils Coil 1496 1516 - -
Vivi1g00140 1855 Pfam Protein kinase domain 1544 1846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Vivi1g00140 1855 ProSiteProfiles Protein kinase domain profile. 1544 1846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 1242 1279 - -
Vivi1g00140 1855 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 Gene3D - 168 477 IPR036770 -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 1425 1462 - -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 960 985 - -
Vivi1g00140 1855 SMART ANK-2a 173 203 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 SMART ANK-2a 277 308 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 SMART ANK-2a 243 272 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 SMART ANK-2a 208 239 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 SMART ANK-2a 425 454 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 26 47 - -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 123 143 - -
Vivi1g00140 1855 Gene3D Transferase(Phosphotransferase) domain 1 1598 1846 - -
Vivi1g00140 1855 FunFam Ankyrin repeat-containing protein ITN1 isoform C 359 531 - -
Vivi1g00140 1855 Pfam Ankyrin repeats (3 copies) 228 299 IPR002110 GO:0005515(InterPro)
Vivi1g00140 1855 PANTHER DUAL SPECIFICITY PROTEIN KINASE 1438 1847 IPR050494 GO:0004674(PANTHER)|GO:0004713(PANTHER)|GO:0005737(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Vivi1g00140 1855 SUPERFAMILY Ankyrin repeat 178 470 IPR036770 -
Vivi1g00140 1855 FunFam Putative serine-threonine-protein kinase dyrk2 1538 1625 - -
Vivi1g00140 1855 ProSiteProfiles Ankyrin repeat region circular profile. 277 299 - -
Vivi1g00140 1855 SMART serkin-6 1544 1846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Vivi1g00140 1855 Pfam Domain of unknown function 534 648 IPR026961 -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 127 143 - -
Vivi1g00140 1855 SUPERFAMILY Protein kinase-like (PK-like) 1533 1848 IPR011009 -
Vivi1g00140 1855 Gene3D Phosphorylase Kinase; domain 1 1538 1625 - -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 1464 1484 - -
Vivi1g00140 1855 CDD PKc-DYRK-like 1544 1846 - -
Vivi1g00140 1855 MobiDBLite consensus disorder prediction 33 47 - -
Vivi1g00140 1855 ProSitePatterns Serine-Threonine protein kinases active-site signature. 1670 1682 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Vivi1g00140 1855 FunFam Serine-threonine-protein kinase ppk15 1623 1847 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00140 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:7878889 Vivi1g00140 Vivi-Chr1:1386743 dispersed
Vivi Vivi-Chr13:540797 Vivi1g00140 Vivi-Chr1:1386743 dispersed
Vivi Vivi-Chr16:316837 Vivi1g00140 Vivi-Chr1:1386743 dispersed
Vivi Vivi-Chr1:1386743 Vivi4g01271 Vivi-Chr4:22176307 dispersed
Vivi Vivi-Chr1:1386743 Vivi1g00618 Vivi-Chr1:7066224 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi12g00007 . 91 606 MAP Kinase gene family AT2G42880 73.333 0.0 729.0
Vivi17g00224 . 1 510 MAP Kinase gene family AT3G18040 82.879 0.0 865.0
Vivi18g00995 . 116 369 MAP Kinase gene family AT1G10210 67.323 2.17e-116 333.0
Vivi1g00426 . 1 509 MAP Kinase gene family AT3G18040 75.096 0.0 790.0
Vivi1g00291 . 50 330 MAP Kinase gene family AT4G01370 33.542 2.84e-28 116.0
Vivi1g00140 . 24 311 MAP Kinase gene family AT5G19010 30.284 4.15e-30 126.0
Vivi19g00019 . 1 575 MAP Kinase gene family AT3G14720 71.622 0.0 822.0
Vivi5g00417 . 1 567 MAP Kinase gene family AT5G19010 81.882 0.0 957.0
Vivi4g01031 . 116 363 MAP Kinase gene family AT2G18170 69.355 1.52e-116 355.0
Vivi2g00032 . 1 372 MAP Kinase gene family AT4G01370 85.215 0.0 670.0
Vivi10g00235 . 64 379 MAP Kinase gene family AT3G59790 35.629 6.62e-58 191.0
Vivi16g00030 . 22 255 MAP Kinase gene family AT3G18040 34.44 2.22e-30 124.0
Vivi6g00343 . 17 374 MAP Kinase gene family AT4G01370 78.771 0.0 605.0
Vivi6g00336 . 42 370 MAP Kinase gene family AT3G45640 84.195 0.0 596.0
Vivi15g00815 . 1 376 MAP Kinase gene family AT4G01370 87.234 0.0 688.0
Vivi14g00050 . 69 374 MAP Kinase gene family AT2G43790 35.873 1.64e-55 185.0
Vivi13g00053 . 22 311 MAP Kinase gene family AT5G19010 32.087 2.81e-32 130.0
Vivi2g00945 . 349 405 MAP Kinase gene family AT3G18040 85.965 1.77e-27 102.0
Vivi5g01356 . 67 394 MAP Kinase gene family AT2G43790 92.073 0.0 614.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi Pkinase 3.3e-50 CL0016 PK CMGC_DYRK-PRP4