AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00526 ATGATTTATCAGCAGCAACAGCAACAGCAACAGCTGGAAACCCCTGAAGAAAAGCCTCAGATTTTCAATGCACAACCGGCAATTAATCACCATCAACGGTCCCAAAATCCTAACTATTTTCCGGTACCGCCCTACACCCAACAAGACCAGCACCACCTCCTTCAGCCGCCTCAAGCCAAGCGGCACAACCCTGGCGGTCTGGACCCGAACTCTCAGATGCCAAAAGTCCCTTTTGCTGATCTGGGTCATGAGTTTTTACTCAGAAGACAGCAGCAGCAGCCACTGTGTTTCACTAACCAGCTGCAATTGCTTCCACAACATCAGCTTCAGCAGAAGCCGTTGATGTTGAGCAAGCAGAAGATGGTGGGAGGCGGGGAAGAAATGGCGCCCCAATCCCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGGCTTTGCTGGACCAGCTCTGCAAGGCAGCAGAGCTGGTAGGCACTGGGAATTTCTCAATCGCGCAAGGGATATTGGCGCGGCTCAATCATCAGCTCTCCCCGGAAGGAAAGCCGTTTCAGAGGGCTGCTTTCTACTTCAAGGAGGCTTTGCAACTGATCCTTATGAATAACAACCCAGCCGCCTCCCCTCCACTAAGGAGTCCCACACCATTTGACGTCATCTTCAAGATGGGTGCTTACAAGGTGTTCTCTGATGTCTCTCCTCTTATTCAATTTGCAAATTTCACTTGCAACCAAGCCCTCCTGGAAGCTCTTGATGATGCTGACAGAATCCACATTATAGACTTTGATATCGGGTTTGGTGCGCAATGGGCTTCCTTTATGCAGGAGCTTCCTGTGAGGAATAGGGGTGCCCCATCATTGAAAATTACAGCCCTTGCCTCTCCTTCCACCACCCACCATCCCCTGGAGCTCAAGCTTTTGCGTGAAAATCTAACACTATTTGCTGATGAAATTGGAATTGCCTTTGAGCTTCAAGTGGTGAACTTTGATTCCTTCGACCCCGTTTCCTACTCAATGCCTTATTTTCGAACCTCTGAAAATGAGGCAATTGTGGTGAATTTCCCTATCTGGTCCTCTTCCAATCACCCGGCTGCCCTGCCCTTGCTCCTGCGTTTTATAAAGCAGCTCTCACCTAAGCTTATGGTCTCTTTGGATAGAGGTTGTGATCGAGGTGACCTCCCATTGCAGCAACATCTCCTGCATGGCATCCAATCCTACACCAACCTCTTGGAATCTCTTGATGCTACTAATGCGATGACAGACACTGTAAGCAAAATTGAGAGGTTCCTCTTCCAGCCGAGGATAGAAAGCACTACTCTGGGTCGACTCCGTTCCCCCGACAAAATGCCTCCTTGGAAAACACTCTTTGCCTCAGCTGGATTCACACCTGTATCCTTCAGTAACTTCACCGAAAGTCAAGCAGATTGTGTGGTGAAGAGGACACTTGTGAGGGGATTTCATGTTGAGAAGCGTCAGGCATTGCTCATTCTCTGCTGGCAGAATCGGGAGCTCATCTCGGCTTCTGCTTGGAGGTGCTGA 1539 49.77 MIYQQQQQQQQLETPEEKPQIFNAQPAINHHQRSQNPNYFPVPPYTQQDQHHLLQPPQAKRHNPGGLDPNSQMPKVPFADLGHEFLLRRQQQQPLCFTNQLQLLPQHQLQQKPLMLSKQKMVGGGEEMAPQSHHQQQQQQQQQQQQALLDQLCKAAELVGTGNFSIAQGILARLNHQLSPEGKPFQRAAFYFKEALQLILMNNNPAASPPLRSPTPFDVIFKMGAYKVFSDVSPLIQFANFTCNQALLEALDDADRIHIIDFDIGFGAQWASFMQELPVRNRGAPSLKITALASPSTTHHPLELKLLRENLTLFADEIGIAFELQVVNFDSFDPVSYSMPYFRTSENEAIVVNFPIWSSSNHPAALPLLLRFIKQLSPKLMVSLDRGCDRGDLPLQQHLLHGIQSYTNLLESLDATNAMTDTVSKIERFLFQPRIESTTLGRLRSPDKMPPWKTLFASAGFTPVSFSNFTESQADCVVKRTLVRGFHVEKRQALLILCWQNRELISASAWRC* 513
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00526 512 MobiDBLite consensus disorder prediction 29 54 - -
Vivi2g00526 512 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 510 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Vivi2g00526 512 Pfam GRAS domain family 149 511 IPR005202 -
Vivi2g00526 512 ProSiteProfiles GRAS family profile. 139 511 IPR005202 -
Vivi2g00526 512 MobiDBLite consensus disorder prediction 29 77 - -
Vivi2g00526 512 MobiDBLite consensus disorder prediction 121 143 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00526 K27747 protein hairy meristem
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr2:5202974 Vivi8g00004 Vivi-Chr8:115793 dispersed
Vivi Vivi-Chr4:17877477 Vivi2g00526 Vivi-Chr2:5202974 transposed
Vivi Vivi-Chr15:14396699 Vivi2g00526 Vivi-Chr2:5202974 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g00919 . 134 530 GRAS Transcription Factor family AT4G37650 68.09 0.0 545.0
Vivi7g00949 . 12 125 GRAS Transcription Factor family AT3G49950 63.248 8.70e-44 147.0
Vivi2g00526 . 204 555 GRAS Transcription Factor family AT4G00150 52.575 1.72e-121 365.0
Vivi17g00917 . 161 529 GRAS Transcription Factor family AT1G14920 36.667 5.63e-74 241.0
Vivi18g00294 . 298 639 GRAS Transcription Factor family AT3G54220 35.215 7.59e-53 187.0
Vivi18g01195 . 423 593 GRAS Transcription Factor family AT1G21450 76.023 9.02e-94 289.0
Vivi1g01124 . 155 518 GRAS Transcription Factor family AT5G17490 34.715 7.87e-66 214.0
Vivi1g00454 . 26 482 GRAS Transcription Factor family AT2G01570 56.455 8.09e-160 461.0
Vivi19g00405 . 201 412 GRAS Transcription Factor family AT2G04890 64.623 3.93e-97 294.0
Vivi19g00799 . 1 444 GRAS Transcription Factor family AT1G55580 52.796 2.30e-135 394.0
Vivi11g00409 . 341 529 GRAS Transcription Factor family AT1G14920 57.513 7.69e-68 230.0
Vivi13g00315 . 367 764 GRAS Transcription Factor family AT1G07530 53.266 3.12e-143 426.0
Vivi13g00314 . 70 510 GRAS Transcription Factor family AT2G37650 36.111 4.79e-71 239.0
Vivi13g00313 . 73 642 GRAS Transcription Factor family AT2G37650 39.896 5.20e-105 347.0
Vivi13g00312 . 70 714 GRAS Transcription Factor family AT2G37650 43.932 2.18e-165 487.0
Vivi9g00092 . 1 510 GRAS Transcription Factor family AT3G13840 53.51 5.19e-177 506.0
Vivi4g00959 . 1 541 GRAS Transcription Factor family AT5G66770 60.252 0.0 598.0
Vivi4g00933 . 29 486 GRAS Transcription Factor family AT4G36710 53.404 2.16e-149 437.0
Vivi2g00364 . 1 416 GRAS Transcription Factor family AT1G63100 52.064 2.43e-117 353.0
Vivi2g00365 . 508 654 GRAS Transcription Factor family AT1G63100 57.823 8.27e-50 167.0
Vivi2g00800 . 8 104 GRAS Transcription Factor family AT1G50420 68.041 2.63e-35 123.0
Vivi6g00472 . 324 767 GRAS Transcription Factor family AT1G07530 43.049 7.72e-120 363.0
Vivi6g00471 . 587 763 GRAS Transcription Factor family AT1G07530 59.887 2.74e-73 251.0
Vivi6g00470 . 367 767 GRAS Transcription Factor family AT1G07530 55.97 4.81e-162 476.0
Vivi6g00468 . 17 537 GRAS Transcription Factor family AT2G29060 37.407 1.12e-84 286.0
Vivi4g01306 . 450 593 GRAS Transcription Factor family AT1G21450 77.083 4.74e-76 243.0
Vivi4g01245 . 221 335 GRAS Transcription Factor family AT2G01570 38.71 3.16e-15 75.5
Vivi15g00419 . 83 555 GRAS Transcription Factor family AT4G00150 57.341 0.0 521.0
Vivi7g00398 . 143 508 GRAS Transcription Factor family AT1G66350 29.676 2.65e-53 187.0
Vivi8g00004 . 284 651 GRAS Transcription Factor family AT3G54220 88.315 0.0 652.0
Vivi12g00674 . 30 490 GRAS Transcription Factor family AT5G48150 71.702 0.0 672.0
Vivi8g00305 . 210 358 GRAS Transcription Factor family AT2G01570 30.128 5.96e-15 75.1
Vivi12g00561 . 234 409 GRAS Transcription Factor family AT3G49950 46.667 3.20e-51 174.0
Vivi14g00715 . 47 295 GRAS Transcription Factor family AT1G66350 66.798 2.40e-111 328.0
Vivi14g01136 . 147 507 GRAS Transcription Factor family AT1G66350 44.415 7.47e-98 308.0
Vivi8g00744 . 243 548 GRAS Transcription Factor family AT2G37650 43.464 1.30e-66 223.0
Vivi18g01264 . 53 316 GRAS Transcription Factor family AT2G04890 35.165 8.96e-42 148.0
Vivi5g00081 . 159 291 GRAS Transcription Factor family AT1G14920 30.405 1.45e-12 67.8
Vivi6g00948 . 8 289 GRAS Transcription Factor family AT1G50420 70.213 8.62e-135 393.0
Vivi19g00614 . 59 489 GRAS Transcription Factor family AT5G48150 72.12 0.0 649.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi GRAS 1.2e-89 CL0063 TF GRAS