AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00529 ATGGGAACGAGAACGAATTTCTACAAGAATCCCTCATTTTCCTATAACAGAGACTTCAGTCTCTCCTCTGTTCTTCAAAATCTCAAAGCGTACAACATTGCCACCGGAAGCGCTTCTCCGACCGATGAATCACCCCCCGCTAACGAGAAAAAGGTCAACCGGAAACGCCGACCGGACCGGAGATCACCGCCATGTCAGAACCCTGAACTCAAAGAGACCGATGGACCTATGTCTCACCAGGATTTCATCAAAAAAAGAAGGAAGGAAGTTAGTTCGGGTCAGGTTTATCAGGAATTAACTCCAGATATTTTGGGGACTTCTAATTCAGGTTTACATTTAGTGGAGTATGAAAGTGATAAAAGCACTTCTTCAGAATCTGGAGCAGAGCAAGATCCTCCAAATCCTGGTCATATAAATGAAGTTGAACAAGTTAAGAGCAGAAGAGAGCAACGTTTTCCTCTTCCTGGGGAACCTGTTTGTGTGGTTTGTGGCTTGTATGGAGAATATATTTGTAATGAGACTGATGATGATGTCTGCAGTATGGATTGCAAAGCTGAGCTTTTAAAAAATCTCAGGCTTTCTGAGGAGTCTTTAAGCAATGAAGGTTGTCCAACTGTCTCCTCATCTGGACTCAAATGTGCATTACCAGTTCCCGAGCTTGGGGAGGATACTTGGGATTATGTTCATCATCGCTGGTCTAAAAAGAGATCTAGTTTATGCACTTATGAATGTTGGAAATGCCAGAGACCTGGGCACCTTGCTGATGATTGTTTGGTGATGACTTCTAATTCTCAATCGCCCTGTTTAAGTCAAACATGTAACAAGGTACCTATGGGGCAAAACAAATCCACTTTCATATCCAGAGATCTTCTTGGACTGTACAAAAGGTGCCATCAAATAGGCAAAAATTTGACAACGGCAAAGTGCAATTTGTGCTGTAGCTCATCAACTTTGGCCACATGCCTTGATTGCAGTACTGTCATTTGTGATAATGCAGGTCATTTGAAAGAGCATATCATTGCACACCCTTCCCATCAGAAAATTTTCTCATATAAGCTCAAGCGTCTGGTGAAATGCTGTAAATCAACATGCGAGGTGACTGATTTGAAGGATCTTTTAGTCTGCCACTACTGTTTGGACAAAGCCTTTGACAAGTTCTATGATATGTATACTGCAACTTGGAAAGGAAATGGACTTTCAATCATTTGGGGTTCTATTTGCTGTGAAGAGCATTTTGCTTGGCATAGGATGAATTGTTTAAATGCAGATGTAGAAGACAGTGCCTACATTTTCAGGAGGCATGCCCAGAAAAACAATTCTATTCAGCTCAGTGACTTCATTTTTTAG 1347 41.65 MGTRTNFYKNPSFSYNRDFSLSSVLQNLKAYNIATGSASPTDESPPANEKKVNRKRRPDRRSPPCQNPELKETDGPMSHQDFIKKRRKEVSSGQVYQELTPDILGTSNSGLHLVEYESDKSTSSESGAEQDPPNPGHINEVEQVKSRREQRFPLPGEPVCVVCGLYGEYICNETDDDVCSMDCKAELLKNLRLSEESLSNEGCPTVSSSGLKCALPVPELGEDTWDYVHHRWSKKRSSLCTYECWKCQRPGHLADDCLVMTSNSQSPCLSQTCNKVPMGQNKSTFISRDLLGLYKRCHQIGKNLTTAKCNLCCSSSTLATCLDCSTVICDNAGHLKEHIIAHPSHQKIFSYKLKRLVKCCKSTCEVTDLKDLLVCHYCLDKAFDKFYDMYTATWKGNGLSIIWGSICCEEHFAWHRMNCLNADVEDSAYIFRRHAQKNNSIQLSDFIF* 449
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00529 448 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 1 448 - -
Vivi2g00529 448 Gene3D - 140 197 - -
Vivi2g00529 448 Pfam HIT zinc finger 157 184 IPR007529 -
Vivi2g00529 448 MobiDBLite consensus disorder prediction 47 67 - -
Vivi2g00529 448 MobiDBLite consensus disorder prediction 36 80 - -
Vivi2g00529 448 MobiDBLite consensus disorder prediction 116 139 - -
Vivi2g00529 448 ProSiteProfiles Zinc finger CCHC-type profile. 244 257 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00529 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr14:24499875 Vivi2g00529 Vivi-Chr2:5231388 dispersed