AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00532 ATGGCTTCATCTCTAGCCCTACGCCGTGCCACTTCCTCTCCTCTCTTCACAAAACTTGTCAGCCCAATACGGGTTGCCTCTGCTTCTCGCTCCTTCAATACCAACGCTCAGGTGGCCGACTACAATGATGGCGAAGACCGCCGCACCGTCTCTCGCCCCCGGTATTCTCCTTCCAATCTCTTCTCAGATGTGTTTGATCCGTTTTCTCGGACGAGAAGTTTGAGCCAGGTGCTGAACTTGATGGATCAGTTCATGGAGAACCCATTAGTGGCAGCATCACGAGGGATGGGAGCTGTGTCGAGAAGAGGATGGGACGTAAAGGAGGAGAAAGACGCTCTGTTCGTAAGAATGGACATGCCGGGACTGGGGAAAGAGGACGTGAAGGTGTCAGTGGAGCAGAACACACTCATCATCAAAGGCGAAGGAGGCAAAGAATTGGAGAACGATGAGACTGGAAGGAAATACACCAGCAGAATCGATCTGCCGGCCAATCTGTACAAGTTTGATGAGATCAAGGCAGAGATGAAGAATGGTGTACTGAAGGTGGTGGTTCCTAAAGTTAAGGAAGATGGGAAGAAAGATGCGTTTCAAGTCAATATCAATTGA 606 50.0 MASSLALRRATSSPLFTKLVSPIRVASASRSFNTNAQVADYNDGEDRRTVSRPRYSPSNLFSDVFDPFSRTRSLSQVLNLMDQFMENPLVAASRGMGAVSRRGWDVKEEKDALFVRMDMPGLGKEDVKVSVEQNTLIIKGEGGKELENDETGRKYTSRIDLPANLYKFDEIKAEMKNGVLKVVVPKVKEDGKKDAFQVNIN* 202
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00532 201 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 95 201 IPR002068 -
Vivi2g00532 201 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 190 IPR044656 -
Vivi2g00532 201 SUPERFAMILY HSP20-like chaperones 71 193 IPR008978 -
Vivi2g00532 201 CDD ACD-sHsps-like 105 178 - -
Vivi2g00532 201 Gene3D - 60 200 IPR008978 -
Vivi2g00532 201 Pfam Hsp20-alpha crystallin family 105 200 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00532 K13993 HSP20 family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr16:11604752 Vivi2g00532 Vivi-Chr2:5248528 dispersed
Vivi Vivi-Chr1:19257335 Vivi2g00532 Vivi-Chr2:5248528 dispersed
Vivi Vivi-Chr2:5248528 Vivi9g00541 Vivi-Chr9:6710092 dispersed
Vivi Vivi-Chr2:5248528 Vivi2g00533 Vivi-Chr2:5255210 tandem