Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g00534 | ATGAGCACGGGAGAGCTTCTCAGCATCGAACCTCTGGAACTTAAGTTCCCTTTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAGGTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGATATTACTGCAGATATGTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAGAGGGTTCTTCGCCAAAGGGCCCTTCAACAGACAATGGCAACCCAAGTGGTCCTGAATTTGCCTCTGTTACAAAAGCATTGGCCAAGTCTCAAGAAAATTCTTCAGAGACTAGAGCTCTTATTTCAAAGCTGACTGAGGAAAGGAATAATGCAATCCGACGAAATAGCAAACTTCGTCAGGAACTGGACCTCTTAAAGCATGATGGAAAGAAAAACCGTGGTGGTGTCTCATTCATGTTTGTCGCCATTGTTGGTTTGATTGGCATAATTGTCGGGTACTTCATCAAGAAGACATAA | 717 | 43.93 | MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTENHVVFKVKTTNPKKYCVRPNTGIVLPRSTCDILVTMQAQKEAPSDLHCKDKFLLQSAVVTAGTSQTDITADMFNKDSGHIVEECKLKVVYVSPPQPPSPVPEGSEEGSSPKGPSTDNGNPSGPEFASVTKALAKSQENSSETRALISKLTEERNNAIRRNSKLRQELDLLKHDGKKNRGGVSFMFVAIVGLIGIIVGYFIKKT* | 239 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g00534 | 238 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN | 6 | 235 | IPR016763 | GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER) | |
| Vivi2g00534 | 238 | FunFam | Vesicle-associated protein 1-1 | 1 | 129 | - | - | |
| Vivi2g00534 | 238 | Gene3D | Immunoglobulins | 2 | 130 | IPR013783 | - | |
| Vivi2g00534 | 238 | MobiDBLite | consensus disorder prediction | 127 | 160 | - | - | |
| Vivi2g00534 | 238 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 6 | 126 | IPR000535 | - | |
| Vivi2g00534 | 238 | MobiDBLite | consensus disorder prediction | 143 | 159 | - | - | |
| Vivi2g00534 | 238 | PIRSF | VAMP-assoc-prot | 1 | 237 | IPR016763 | GO:0005789(InterPro) | |
| Vivi2g00534 | 238 | Coils | Coil | 167 | 208 | - | - | |
| Vivi2g00534 | 238 | Pfam | MSP (Major sperm protein) domain | 7 | 110 | IPR000535 | - | |
| Vivi2g00534 | 238 | SUPERFAMILY | PapD-like | 2 | 141 | IPR008962 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g00534 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr15:14748550 | Vivi2g00534 | Vivi-Chr2:5258569 | dispersed | |
| Vivi | Vivi-Chr2:5258569 | Vivi5g00368 | Vivi-Chr5:3685000 | dispersed | |
| Vivi | Vivi-Chr14:4929733 | Vivi2g00534 | Vivi-Chr2:5258569 | transposed | |
| Vivi | Vivi-Chr15:14343591 | Vivi2g00534 | Vivi-Chr2:5258569 | wgd |