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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00534 ATGAGCACGGGAGAGCTTCTCAGCATCGAACCTCTGGAACTTAAGTTCCCTTTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAGGTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGATATTACTGCAGATATGTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAGAGGGTTCTTCGCCAAAGGGCCCTTCAACAGACAATGGCAACCCAAGTGGTCCTGAATTTGCCTCTGTTACAAAAGCATTGGCCAAGTCTCAAGAAAATTCTTCAGAGACTAGAGCTCTTATTTCAAAGCTGACTGAGGAAAGGAATAATGCAATCCGACGAAATAGCAAACTTCGTCAGGAACTGGACCTCTTAAAGCATGATGGAAAGAAAAACCGTGGTGGTGTCTCATTCATGTTTGTCGCCATTGTTGGTTTGATTGGCATAATTGTCGGGTACTTCATCAAGAAGACATAA 717 43.93 MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTENHVVFKVKTTNPKKYCVRPNTGIVLPRSTCDILVTMQAQKEAPSDLHCKDKFLLQSAVVTAGTSQTDITADMFNKDSGHIVEECKLKVVYVSPPQPPSPVPEGSEEGSSPKGPSTDNGNPSGPEFASVTKALAKSQENSSETRALISKLTEERNNAIRRNSKLRQELDLLKHDGKKNRGGVSFMFVAIVGLIGIIVGYFIKKT* 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00534 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 235 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Vivi2g00534 238 FunFam Vesicle-associated protein 1-1 1 129 - -
Vivi2g00534 238 Gene3D Immunoglobulins 2 130 IPR013783 -
Vivi2g00534 238 MobiDBLite consensus disorder prediction 127 160 - -
Vivi2g00534 238 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Vivi2g00534 238 MobiDBLite consensus disorder prediction 143 159 - -
Vivi2g00534 238 PIRSF VAMP-assoc-prot 1 237 IPR016763 GO:0005789(InterPro)
Vivi2g00534 238 Coils Coil 167 208 - -
Vivi2g00534 238 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Vivi2g00534 238 SUPERFAMILY PapD-like 2 141 IPR008962 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00534 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:14748550 Vivi2g00534 Vivi-Chr2:5258569 dispersed
Vivi Vivi-Chr2:5258569 Vivi5g00368 Vivi-Chr5:3685000 dispersed
Vivi Vivi-Chr14:4929733 Vivi2g00534 Vivi-Chr2:5258569 transposed
Vivi Vivi-Chr15:14343591 Vivi2g00534 Vivi-Chr2:5258569 wgd